An ensemble approach to accurately detect somatic mutations using SomaticSeq
☆206Aug 6, 2026Updated last week
Alternatives and similar repositories for somaticseq
Users that are interested in somaticseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- NeuSomatic: Deep convolutional neural networks for accurate somatic mutation detection☆176Dec 23, 2021Updated 4 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆26Oct 6, 2020Updated 5 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Mar 17, 2016Updated 10 years ago
- VarDict☆204Jan 5, 2024Updated 2 years ago
- Characterization of Germline variants☆102Mar 15, 2022Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- tools for adding mutations to existing .bam files, used for testing mutation callers☆251Aug 5, 2026Updated last week
- microsatellite instability detection using tumor only or paired tumor-normal data☆134Jan 6, 2021Updated 5 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆99Apr 20, 2026Updated 3 months ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆337May 27, 2025Updated last year
- ☆46Nov 18, 2019Updated 6 years ago
- Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing☆134Jan 27, 2020Updated 6 years ago
- ☆23Sep 4, 2018Updated 7 years ago
- Personal Cancer Genome Reporter (PCGR)☆281Updated this week
- Microassembly based somatic variant caller for NGS data☆154Jun 23, 2022Updated 4 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆29Feb 17, 2021Updated 5 years ago
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆420May 25, 2026Updated 2 months ago
- Haplotype VCF comparison tools☆472Dec 7, 2023Updated 2 years ago
- VarDict Java port☆141Jan 5, 2024Updated 2 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Aug 10, 2021Updated 5 years ago
- DRAGEN Tumor/Normal workflow post-processing☆24Sep 18, 2023Updated 2 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Aug 24, 2022Updated 3 years ago
- ABRA2☆97Dec 2, 2022Updated 3 years ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆404Jun 16, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆51Jun 27, 2019Updated 7 years ago
- Tools for working with genomic and high throughput sequencing data.☆372Updated this week
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆93Oct 3, 2024Updated last year
- A structural variation pipeline for short-read sequencing☆205Updated this week
- Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.☆499Feb 25, 2026Updated 5 months ago
- A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets☆13Updated this week
- RADIA: RNA and DNA Integrated Analysis for Somatic Mutation Detection☆29Oct 1, 2020Updated 5 years ago
- Bayesian haplotype-based mutation calling☆325Feb 13, 2026Updated 6 months ago
- Open workflow definitions for genomic analysis from MGI at WUSM.☆107Jun 23, 2025Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Fast and accurate gene fusion detection from RNA-Seq data☆273Sep 21, 2025Updated 10 months ago
- Canvas - Copy number variant (CNV) calling from DNA sequencing data☆129Apr 20, 2026Updated 3 months ago
- xHLA: Fast and accurate HLA typing from short read sequence data☆117Oct 13, 2023Updated 2 years ago
- Pipeline for generating RNAseq-based cancer patient reports☆15Jul 31, 2026Updated 2 weeks ago
- gap opening realigner for BAM data streams☆18Oct 17, 2012Updated 13 years ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆265Jun 17, 2024Updated 2 years ago
- Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis☆1,030Aug 24, 2024Updated last year