cancerit / ascatNgsLinks
Somatic copy number analysis using WGS paired end wholegenome sequencing
☆72Updated 4 years ago
Alternatives and similar repositories for ascatNgs
Users that are interested in ascatNgs are comparing it to the libraries listed below
Sorting:
- Battenberg R package for subclonal copynumber estimation☆91Updated 3 months ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆98Updated 4 years ago
- ☆72Updated 2 years ago
- BISulfite-seq CUI Toolkit☆68Updated 3 weeks ago
- Battenberg algorithm and associated implementation script☆53Updated 5 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆55Updated 5 years ago
- Microsatellite instability (MSI) detection for tumor only data.☆110Updated last year
- QDNAseq package for Bioconductor☆52Updated last year
- Reference data: BED files, genes, transcripts, variations.☆87Updated 7 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Software program for checking sample matching for NGS data☆137Updated last year
- identifying mutational significance in cancer genomes☆62Updated 2 years ago
- Somatic copy variant caller (CNV) for next generation sequencing☆75Updated last year
- ☆21Updated 2 weeks ago
- Tumor Mutational Burden☆62Updated 3 months ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆78Updated last year
- ☆116Updated 2 years ago
- ☆78Updated 6 months ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated 11 months ago
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated last week
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- An R package for inferring the subclonal architecture of tumors☆122Updated 2 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago
- Publication quality NGS track plotting☆114Updated 2 weeks ago
- Finder of Somatic Fusion Genes in RNA-seq data☆147Updated last month
- Documenting usage and experience with bioinformatic tools☆40Updated 10 years ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆52Updated 3 years ago