rhshah / IMPACT-Pipeline
Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay
☆55Updated 3 years ago
Alternatives and similar repositories for IMPACT-Pipeline:
Users that are interested in IMPACT-Pipeline are comparing it to the libraries listed below
- ☆38Updated 11 months ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 5 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆96Updated 3 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆96Updated 2 years ago
- A simplified pipeline for ctDNA sequencing data analysis☆36Updated 7 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆69Updated 4 years ago
- Battenberg algorithm and associated implementation script☆52Updated 4 years ago
- identifying mutational significance in cancer genomes☆60Updated 2 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆51Updated 4 years ago
- Somatic copy variant caller (CNV) for next generation sequencing☆70Updated 4 months ago
- Documenting usage and experience with bioinformatic tools☆40Updated 9 years ago
- ☆108Updated last year
- QDNAseq package for Bioconductor☆49Updated 5 months ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆66Updated 4 months ago
- Reference data: BED files, genes, transcripts, variations.☆82Updated 7 years ago
- Battenberg R package for subclonal copynumber estimation☆83Updated 2 months ago
- WISECONDOR (WIthin-SamplE COpy Number aberration DetectOR): Detect fetal trisomies and smaller CNV's in a maternal plasma sample using wh…☆44Updated 8 months ago
- CN-Learn☆29Updated 4 years ago
- ☆45Updated 5 years ago
- ☆68Updated 2 years ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆36Updated 2 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆20Updated 2 years ago
- ☆65Updated last year
- Characterization of Germline variants☆98Updated 2 years ago
- MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.☆56Updated 7 months ago
- Microsatellite instability (MSI) detection for tumor only data.☆97Updated 8 months ago
- ☆78Updated 10 years ago
- ☆51Updated 2 years ago
- R package designed to simplify structural variant analysis☆71Updated 3 years ago
- ☆71Updated 8 months ago