lfresard / blood_rnaseq_rare_disease_paper
☆29Updated 5 years ago
Alternatives and similar repositories for blood_rnaseq_rare_disease_paper:
Users that are interested in blood_rnaseq_rare_disease_paper are comparing it to the libraries listed below
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- Tool for RNA-Seq analysis.☆38Updated 2 years ago
- RNA editing quantification in deep transcriptome data☆15Updated 2 years ago
- This github repository contains code to reproduce the analysis in our paper "Variability in estimated gene expression among commonly used…☆28Updated last year
- Filtering of PDX samples for mouse derived reads☆27Updated 2 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆36Updated this week
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆28Updated last week
- An R interface to the MEME Suite☆50Updated 5 months ago
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 3 years ago
- Summer school course materials collection☆25Updated 6 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated 8 months ago
- GTEx analysis scripts☆20Updated 8 years ago
- documentation for trackViewer☆29Updated 5 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆34Updated 3 years ago
- Bioinformatics analysis scripts, workflows, general code examples☆53Updated 4 years ago
- a set of NGS pipelines☆24Updated 2 weeks ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆50Updated 2 weeks ago
- Tutorial for AMSI BioInfoSummer 2018☆29Updated 6 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- Pipeline for Somatic Variant Calling with WES and WGS data☆21Updated 10 months ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 6 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Benchmarking of aligners and variant callers for Whole Exome Sequencing data☆19Updated 6 years ago
- ☆33Updated 2 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆30Updated last year
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆38Updated 3 years ago
- R package wrapping bedtools☆38Updated this week
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 6 years ago