lfresard / blood_rnaseq_rare_disease_paper
☆29Updated 5 years ago
Alternatives and similar repositories for blood_rnaseq_rare_disease_paper:
Users that are interested in blood_rnaseq_rare_disease_paper are comparing it to the libraries listed below
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- Tool for RNA-Seq analysis.☆38Updated 3 years ago
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 3 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- This github repository contains code to reproduce the analysis in our paper "Variability in estimated gene expression among commonly used…☆28Updated last year
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Updated 3 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 6 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆45Updated 7 years ago
- This repository contains course materials from JAX-BD2K workshop.☆31Updated 5 years ago
- Filtering of PDX samples for mouse derived reads☆27Updated 2 years ago
- Bioinformatics analysis scripts, workflows, general code examples☆53Updated 4 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated 9 months ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- Merge fastq files split over lanes☆20Updated 7 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆26Updated last week
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆50Updated this week
- ☆43Updated 6 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated last year
- viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data☆27Updated 6 months ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆27Updated 3 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- documentation for trackViewer☆29Updated 5 years ago
- Benchmarking of aligners and variant callers for Whole Exome Sequencing data☆19Updated 6 years ago
- 📊 An R package of RNA-seq workflow☆16Updated 2 years ago
- ☆48Updated 4 years ago
- ☆33Updated 2 years ago
- An R interface to the MEME Suite☆50Updated 6 months ago