IARCbioinfo / gatk4-GenotypeGVCFs-nf
Joint calling of gVCF, following GATK4 Best Practices
☆12Updated 5 years ago
Alternatives and similar repositories for gatk4-GenotypeGVCFs-nf:
Users that are interested in gatk4-GenotypeGVCFs-nf are comparing it to the libraries listed below
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 5 years ago
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆26Updated last month
- 📊Evaluating, filtering, comparing, and visualising VCF☆27Updated last year
- Burden testing against public controls☆50Updated 10 months ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆51Updated 4 years ago
- Utility functions for FACETS☆34Updated 9 months ago
- QDNAseq bin annotation for hg38☆14Updated 2 years ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆33Updated 7 years ago
- QDNAseq package for Bioconductor☆49Updated 5 months ago
- Report reverse and ambiguous strand SNPs in GWAS data☆33Updated 5 years ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 3 years ago
- Rocking R at UMCCR☆9Updated 4 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆96Updated 3 years ago
- R package to work with ctDNA sequencing data☆37Updated 2 years ago
- An R package for predicting HR deficiency from mutation contexts☆27Updated last year
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …☆17Updated last year
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆33Updated 3 years ago
- Flexible Bayesian inference of mutational signatures☆33Updated last year
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆46Updated last month
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆66Updated 4 months ago
- Genomic Association Tester☆30Updated last year
- processing illumina SNP arrays☆19Updated 7 years ago
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆22Updated last year
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆45Updated 6 years ago
- R package designed to simplify structural variant analysis☆71Updated 3 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 4 years ago
- Enhanced version of the FastQTL QTL mapper☆61Updated last year
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆26Updated last year
- ☆21Updated this week
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆31Updated 8 years ago