IARCbioinfo / gatk4-GenotypeGVCFs-nfLinks
Joint calling of gVCF, following GATK4 Best Practices
☆12Updated 6 years ago
Alternatives and similar repositories for gatk4-GenotypeGVCFs-nf
Users that are interested in gatk4-GenotypeGVCFs-nf are comparing it to the libraries listed below
Sorting:
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆98Updated 4 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Report reverse and ambiguous strand SNPs in GWAS data☆33Updated 6 years ago
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆55Updated 5 years ago
- QDNAseq package for Bioconductor☆53Updated last year
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆28Updated last year
- Relevant papers for CNV and SV approaches☆94Updated last year
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Updated last year
- Burden testing against public controls☆50Updated last year
- ☆72Updated 2 years ago
- ☆21Updated last month
- ☆38Updated 4 years ago
- MOsaic CHromosomal Alterations (MoChA) caller☆88Updated 2 months ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- Concordance and contamination estimator for tumor–normal pairs☆58Updated last year
- TAPES : a Tool for Assessment and Prioritisation in Exome Studies☆25Updated last month
- Thousand Variant Callers Project Repository☆74Updated 6 years ago
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …☆18Updated 2 years ago
- List of IARC bioinformatics pipelines and resources☆53Updated 3 weeks ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆33Updated 8 years ago
- ☆78Updated 11 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 4 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆55Updated last week
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆28Updated 5 months ago
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆54Updated last year
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 6 years ago
- An R package for predicting HR deficiency from mutation contexts☆30Updated 9 months ago