Joint calling of gVCF, following GATK4 Best Practices
☆12Apr 3, 2019Updated 7 years ago
Alternatives and similar repositories for gatk4-GenotypeGVCFs-nf
Users that are interested in gatk4-GenotypeGVCFs-nf are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆20Jul 6, 2026Updated last month
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Mar 4, 2019Updated 7 years ago
- GA4GH Quality Control of Whole Genome Sequencing's metrics definition, benchmark resources and reference implementations☆26Jul 28, 2026Updated 3 weeks ago
- Nextflow implementation of the smoove workflow and other tools for SV calling and QC☆12Nov 12, 2020Updated 5 years ago
- ☆82Nov 30, 2018Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Automated ACMG/AMP classification for human variants associated with congenital hearing loss☆11May 14, 2025Updated last year
- call copy number from WES(WXS)☆12May 10, 2021Updated 5 years ago
- Codes to regenerate figures for mutagen paper☆12Apr 8, 2021Updated 5 years ago
- reference implementation of GA4GH WGS Quality Control Standards☆11Nov 25, 2025Updated 8 months ago
- Source code for the GWAS Diversity Monitor☆16Updated this week
- As part of the COVID-19 Host Genetics Global initative, this repo serves to corroborate sample scripts for sequencing QC.☆12Jul 30, 2020Updated 6 years ago
- Finding cryptic relationships to boost disease gene detection☆12May 31, 2023Updated 3 years ago
- Research pipeline for exploring clinically relevant genomic variants☆17Jul 20, 2026Updated 3 weeks ago
- ☆14Dec 2, 2022Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- GERMLINE is an algorithm for inferring long shared segments of Identity by Descent (IBD) between pairs of individuals in a large populati…☆16Apr 5, 2019Updated 7 years ago
- GeneDMRs is an R package to detect the differentially methylated regions based on genes, gene body, CpG islands and gene body interacted …☆10Nov 18, 2023Updated 2 years ago
- Structural variant pipeline☆18Jun 25, 2020Updated 6 years ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆212Mar 19, 2021Updated 5 years ago
- ☆10Apr 17, 2023Updated 3 years ago
- Cluster-based analysis of CpG methylation☆13Jan 11, 2024Updated 2 years ago
- Mutation Spectra Analysis☆10Mar 15, 2018Updated 8 years ago
- ☆18Feb 18, 2021Updated 5 years ago
- Pipelines for processing malaria parasite and mosquito genome sequence data.☆15Nov 2, 2024Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Critical downstream analysis steps for single-cell RNA sequencing data☆13Feb 21, 2021Updated 5 years ago
- Create cwl workflows by writing a simple Python script☆39Apr 29, 2020Updated 6 years ago
- Genomic data interpretation and visualization Workshop☆22May 8, 2026Updated 3 months ago
- Encore Analysis Server☆13Apr 30, 2026Updated 3 months ago
- FLT3 ITD detection (ITDseek) and simulation (ITDsim)☆14Feb 27, 2019Updated 7 years ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆51May 26, 2026Updated 2 months ago
- Tool used to quantify extrachromosomal DNA (ecDNA) in metaphase images stained with DAPI and FISH probes.☆19Jul 28, 2026Updated 3 weeks ago
- Covid-19 HGI WES/WGS burden test BQC-19 pipeline☆16May 26, 2022Updated 4 years ago
- Whole Genome Sequenceing Structural Variation Pipelines☆18Apr 4, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Linear time detection of Identity by Descent☆13Jul 22, 2011Updated 15 years ago
- RNA mapping pipeline☆19Jun 3, 2018Updated 8 years ago
- Repository for the Anczukow-Lab splicing pipeline☆17Mar 17, 2025Updated last year
- tips and tricks in genome-wide association studies - a tutorial☆14Jul 25, 2023Updated 3 years ago
- Pan gGnome Viewer☆10Jul 10, 2025Updated last year
- This is an R package to retrieve data from Open Target☆15Jul 30, 2026Updated 2 weeks ago
- AWS Quick Start Team☆24Oct 3, 2024Updated last year