IARCbioinfo / gatk4-GenotypeGVCFs-nfLinks
Joint calling of gVCF, following GATK4 Best Practices
☆12Updated 6 years ago
Alternatives and similar repositories for gatk4-GenotypeGVCFs-nf
Users that are interested in gatk4-GenotypeGVCFs-nf are comparing it to the libraries listed below
Sorting:
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆53Updated 4 years ago
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆27Updated last month
- ☆69Updated 2 years ago
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- ☆21Updated this week
- QDNAseq package for Bioconductor☆50Updated 11 months ago
- ☆78Updated 11 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 6 years ago
- QDNAseq bin annotation for hg38☆16Updated 3 months ago
- Enhanced version of the FastQTL QTL mapper☆67Updated 2 years ago
- Relevant papers for CNV and SV approaches☆94Updated 8 months ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆149Updated 2 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆72Updated 10 months ago
- Genomic Association Tester☆31Updated 2 years ago
- Thousand Variant Callers Project Repository☆73Updated 5 years ago
- BISulfite-seq CUI Toolkit☆65Updated 6 months ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆59Updated 4 years ago
- Battenberg algorithm and associated implementation script☆53Updated 4 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- Tumor Mutational Burden☆61Updated 10 months ago
- Create regional association plots from GWAS or meta-analysis☆61Updated 5 years ago
- Python program designed to reconstruct immunoglobulin gene rearrangements and oncogenic translocations from WGS, WES and capture NGS in l…☆20Updated 2 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 4 years ago
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆28Updated last year
- Tools for analyzing DNA methylation data☆42Updated last week
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆70Updated 2 years ago