Alternatives and similar repositories for cfSNV_docker

Users that are interested in cfSNV_docker are comparing it to the libraries listed below

• ajank / balancer-paper
  Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…
  ☆10Updated 5 years ago
• amf71 / ECLIPSE
  ☆11Updated 2 years ago
• MarioniLab / CELLOseq
  Transposable element expression at unique loci in single cells with CELLO-seq
  ☆9Updated last year
• daewoooo / StrandPhaseR
  R Package for phasing of single cell Strand-seq data
  ☆10Updated 6 months ago
• parklab / SCAN2
  SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)
  ☆14Updated 2 weeks ago
• cyang235 / smooth-seq
  A pipeline for Smooth-seq data analysis.
  ☆10Updated 3 years ago
• AlexandrovLab / SigProfilerTopography
  SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…
  ☆20Updated this week
• nghiavtr / FuSeq_WES
  ☆11Updated 2 years ago
• dekkerlab / matrix_paper
  Scripts and notebooks used in Akgol Oksuz et al. paper
  ☆11Updated 4 years ago
• navinlabcode / ACT_paper
  Scripts used for the ACT paper
  ☆12Updated 4 years ago
• henssenlab / TreeShapedRearrangements
  Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)
  ☆15Updated 4 years ago
• NYU-BFX / RNA-Seq_Standard
  ☆11Updated 7 years ago
• bioinfo-biols / Code_for_circSC
  Analysis pipeline for our circSC manuscript
  ☆13Updated 3 years ago
• VanLoo-lab / CAMDAC
  ☆12Updated 2 months ago
• a2iEditing / deNovo-Detect
  ☆13Updated 2 years ago
• yupenghe / encode_dna_dynamics
  Custom scripts used in "Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus"
  ☆11Updated 4 years ago
• biosinodx / SCcaller
  Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data
  ☆35Updated 8 months ago
• annalam / cfdna-wgs-manuscript-code
  Code used to generate the results in "Somatic chronology of treatment-resistant prostate cancer via deep whole-genome ctDNA sequencing"
  ☆14Updated last year
• iaaaka / evo-devo
  ☆12Updated 4 years ago
• shahcompbio / wgs
  Whole genome workflows
  ☆12Updated 9 months ago
• emily-mitchell / normal_haematopoiesis
  ☆8Updated 2 years ago
• wanqingshao / TE_expression_in_scRNAseq
  ☆18Updated 4 years ago
• deWitLab / GENOVA
  GENome Organisation Visual Analytics
  ☆16Updated 3 years ago
• LappalainenLab / lorals_paper_code
  ☆26Updated 3 years ago
• timplab / nanoNOMe
  nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis
  ☆18Updated 2 years ago
• Personalis-DASH / DASH
  ☆11Updated last year
• zhongw2 / GeneTEFlow
  ☆23Updated 4 years ago
• QingliGuo / FFPEsig
  Codes and Data for FFPEsig manuscript
  ☆17Updated last year
• smithlabcode / abismal
  Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.
  ☆18Updated 3 weeks ago
• JiejunShi / CAMDA
  Quantify the Concurrence of DNA Methylation and De-methylation
  ☆8Updated 3 years ago