☆15Dec 29, 2025Updated 2 months ago
Alternatives and similar repositories for Manuscripts
Users that are interested in Manuscripts are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Codes to regenerate figures for mutagen paper☆12Apr 8, 2021Updated 4 years ago
- call copy number from WES(WXS)☆11May 10, 2021Updated 4 years ago
- ☆18Feb 18, 2021Updated 5 years ago
- Total copy number inference from single-cell RNA and ATAC sequing with cell clustering☆11Oct 31, 2024Updated last year
- Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper☆27Nov 21, 2022Updated 3 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Jan 17, 2020Updated 6 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆18Feb 19, 2020Updated 6 years ago
- R package providing various functions relevant for gene expression analysis with emphasis on breast cancer.☆30May 20, 2025Updated 10 months ago
- ☆12Nov 20, 2023Updated 2 years ago
- 3D hotspot mutation proximity analysis tool☆52Mar 31, 2023Updated 2 years ago
- scRNA-seq Shiny App☆14May 1, 2023Updated 2 years ago
- ☆19Oct 23, 2023Updated 2 years ago
- ☆16Sep 1, 2023Updated 2 years ago
- NeoFlow: a proteogenomics pipeline for neoantigen discovery☆28Nov 16, 2024Updated last year
- ☆48Jan 7, 2025Updated last year
- source code for HpcGridRunner☆16Aug 2, 2021Updated 4 years ago
- Central repository for the Multiplexed Tissue Imaging Workshop 2023.☆10Jan 9, 2023Updated 3 years ago
- High-performance stochastic modeling of DNA loop extrusion interactions☆18Dec 22, 2025Updated 3 months ago
- Fork of the Polysolver project☆33Nov 21, 2019Updated 6 years ago
- Utility functions for FACETS☆39Oct 24, 2025Updated 5 months ago
- A toolkit for analyzing architectural stripes☆20Dec 1, 2024Updated last year
- Single Cell RNA-seq UMI Filtering Facilitator☆10Oct 6, 2025Updated 5 months ago
- ☆14Apr 22, 2022Updated 3 years ago
- MutSig2CV from Lawrence et al. 2014☆33Aug 18, 2020Updated 5 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆30Apr 19, 2018Updated 7 years ago
- ☆20May 1, 2023Updated 2 years ago
- SARS-CoV-2 analysis pipeline for multiplex-PCR MPS(Massive Parrallel Sequencing) data☆20Jan 24, 2022Updated 4 years ago
- ☆15Nov 2, 2021Updated 4 years ago
- Three bacterial GWAS methods all rolled into one easy-to-use R package☆22Apr 16, 2024Updated last year
- ☆38Jul 26, 2016Updated 9 years ago
- Joint calling of gVCF, following GATK4 Best Practices☆12Apr 3, 2019Updated 6 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆22Dec 14, 2021Updated 4 years ago
- Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".☆128Sep 24, 2024Updated last year
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Jan 31, 2024Updated 2 years ago
- Scripts for the analysis of TT-seq and DRB/TT-seq data.☆11Mar 11, 2020Updated 6 years ago
- genome annotation (RNAseq and TE) pipeline (draft)☆13Aug 26, 2025Updated 6 months ago
- Tool used to quantify extrachromosomal DNA (ecDNA) in metaphase images stained with DAPI and FISH probes.☆16Mar 3, 2026Updated 3 weeks ago
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Sep 25, 2019Updated 6 years ago
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics☆11Oct 29, 2020Updated 5 years ago