diepthihoang / mpboot
MPBoot: Fast phylogenetic maximum parsimony tree inference and bootstrap approximation
☆18Updated 3 months ago
Alternatives and similar repositories for mpboot:
Users that are interested in mpboot are comparing it to the libraries listed below
- Rapid competitive read demulitplexer. Made with tries.☆23Updated last year
- Symmetric DUST for finding low-complexity regions in DNA sequences☆37Updated last year
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- Generate interactive dotplot from mummer4 output using plotly☆26Updated 5 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆48Updated 5 years ago
- Find Unique genomic Regions☆29Updated this week
- Assembly by Reduced Complexity (ARC)☆41Updated 9 years ago
- Population-wide Deletion Calling☆35Updated 6 months ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆14Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 9 months ago
- transposable element typing pipeline☆17Updated last year
- Visualising discordant reads☆15Updated 9 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- ☆15Updated 7 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆33Updated 4 years ago
- ☆20Updated 2 years ago
- Method to optimally select samples for validation and resequencing☆27Updated 3 years ago
- WGS (Wheat) Robust Assembly Pipeline☆22Updated 3 years ago
- Convert HAL to VG☆22Updated 7 months ago
- TreeBeST: Tree Building guided by Species Tree☆14Updated 14 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- A comparative genome scaffolding tool☆17Updated 6 years ago
- ☆28Updated last year
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago