diepthihoang / mpbootLinks
MPBoot: Fast phylogenetic maximum parsimony tree inference and bootstrap approximation
☆20Updated last year
Alternatives and similar repositories for mpboot
Users that are interested in mpboot are comparing it to the libraries listed below
Sorting:
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆39Updated 2 years ago
- ☆29Updated 3 years ago
- Find Unique genomic Regions☆32Updated last week
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Generate unique KMERs for every contig in a FASTA file☆49Updated 3 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆29Updated 5 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 6 months ago
- Haplotype-aware genome assembly toolkit☆30Updated 6 years ago
- Making diploid assembly becomes common practice for genomic study☆30Updated 8 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆21Updated 3 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated 4 months ago
- Comprehensive alignment, whole-genome coverage, and capture coverage statistics.☆19Updated last year
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 4 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- ☆29Updated 4 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆25Updated 2 months ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- Implementation of ToL genome assembly workflows☆24Updated last week
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆29Updated 10 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆39Updated 4 months ago
- In-silico PCR, primer design and padlock design for in-situ sequencing☆53Updated 2 weeks ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆53Updated 10 months ago
- Transfer coordinates across genomes☆23Updated 8 months ago
- ☆51Updated 6 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 4 years ago