diepthihoang / mpbootLinks
MPBoot: Fast phylogenetic maximum parsimony tree inference and bootstrap approximation
☆20Updated last year
Alternatives and similar repositories for mpboot
Users that are interested in mpboot are comparing it to the libraries listed below
Sorting:
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆39Updated 2 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 6 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆35Updated 6 years ago
- Generate unique KMERs for every contig in a FASTA file☆49Updated 3 years ago
- Haplotype-aware genome assembly toolkit☆30Updated 6 years ago
- Visualize whole genome alignments as linear maps☆74Updated 2 weeks ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆54Updated 11 months ago
- ☆28Updated 3 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Find Unique genomic Regions☆32Updated 2 weeks ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆77Updated 9 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆39Updated 4 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 4 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- Making diploid assembly becomes common practice for genomic study☆30Updated 8 years ago
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- Implementation of ToL genome assembly workflows☆26Updated this week
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆47Updated 5 months ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆29Updated 5 months ago
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 4 years ago
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆60Updated last year
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆29Updated 10 years ago
- Structural variant caller☆55Updated 4 years ago
- A method of assessing sequence complexity based on kmer frequencies☆33Updated 7 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 5 years ago
- Easy genomic regions for short-read variant calling☆45Updated 4 months ago