MPBoot: Fast phylogenetic maximum parsimony tree inference and bootstrap approximation
☆21Dec 4, 2024Updated last year
Alternatives and similar repositories for mpboot
Users that are interested in mpboot are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- phylobayes mpi☆28Jul 30, 2026Updated 2 months ago
- Synteny matrix representation with maximum likelihood pipeline☆16Jul 7, 2021Updated 5 years ago
- Implementation of a polymorphism aware phylogenetic model using HYPHY☆19Jan 14, 2022Updated 4 years ago
- ☆27May 22, 2020Updated 6 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Jan 9, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆27Aug 8, 2024Updated 2 years ago
- Using combined evidence from replicates to evaluate ChIP-seq peaks☆22Mar 14, 2026Updated 6 months ago
- exploring viral genome assembly with variation graph tools☆20May 18, 2020Updated 6 years ago
- A new graphical interface for RAxML☆23Sep 15, 2026Updated 3 weeks ago
- Faster multispecies coalescent inference using multilocus data☆15Aug 13, 2023Updated 3 years ago
- An R interface for PHYLIP.☆15May 7, 2020Updated 6 years ago
- Economic Genome Assembly from Low Coverage Illumina and Nanopore Data☆19Feb 15, 2022Updated 4 years ago
- ☆16Apr 11, 2026Updated 5 months ago
- Smith-Waterman database searches with inter-sequence SIMD parallelisation☆61Oct 2, 2026Updated last week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Jun 28, 2018Updated 8 years ago
- Hybrid Error Correction of Long Reads using Iterative Learning☆10Sep 27, 2018Updated 8 years ago
- Haplotype-aware genome assembly toolkit☆30Jan 8, 2020Updated 6 years ago
- Reference-free quality assessment for Hi-C sequencing data☆13Apr 30, 2024Updated 2 years ago
- EXPERIMENTAL implementation of side graph☆10Apr 16, 2015Updated 11 years ago
- ☆11Aug 2, 2025Updated last year
- FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignmen…☆35Jun 12, 2024Updated 2 years ago
- Long read to reference genome mapping tool☆13Mar 14, 2024Updated 2 years ago
- This is the official site for JASPER (Jellyfish based Assembly Sequence Polisher for Error Reduction)☆12Jun 27, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Jan 4, 2021Updated 5 years ago
- Heuristic, parsimony-based ancestral recombination graph inference☆17Aug 25, 2021Updated 5 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Mar 6, 2024Updated 2 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 7 years ago
- faster haplotype-based admixture inference and dating software☆12Nov 25, 2025Updated 10 months ago
- Updated figures for "A benchmarking of WGS-based structural variant callers" paper☆27Apr 3, 2022Updated 4 years ago
- Assign genotypes to Salmonella Paratyphi A isolates using their whole-genome data.☆10Mar 6, 2025Updated last year
- StriDe Assembler☆25Nov 23, 2017Updated 8 years ago
- Efficient phylogenomic software by maximum likelihood☆211Nov 4, 2021Updated 4 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 9 years ago
- Custom scripts used in "Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus"☆11Oct 15, 2020Updated 5 years ago
- Phylo.IO JS tree viewer☆36May 12, 2026Updated 4 months ago
- WITCH is a multiple sequence alignment method that uses multiple weighted HMMs to align unaligned sequences and find consensuses.☆13Nov 18, 2025Updated 10 months ago
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Mar 17, 2016Updated 10 years ago
- ☆17Aug 25, 2025Updated last year
- JSON-based FON (Feature Object Notation) format and tools to simplify genomic annotations usage☆13Jun 11, 2025Updated last year