Alternatives and similar repositories for swipe

Users that are interested in swipe are comparing it to the libraries listed below

• cosmo-team / cosmo
  Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.
  ☆51Updated last year
• pmelsted / KmerStream
  Streaming algorithm for computing kmer statistics for massive genomics datasets
  ☆54Updated 5 years ago
• ekg / fastahack
  utilities for indexing and sequence extraction from FASTA files
  ☆59Updated 4 years ago
• yechengxi / DBG2OLC
  A genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long…
  ☆65Updated 4 years ago
• splatlab / squeakr
  Squeakr: An Exact and Approximate k -mer Counting System
  ☆85Updated 3 months ago
• HingeAssembler / HINGE
  Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution"
  ☆64Updated 4 years ago
• HKU-BAL / MegaGTA
  HMM-guided metagenomic gene-targeted assembler using iterative de Bruijn graphs
  ☆17Updated 8 years ago
• cschin / Peregrine
  Peregrine: Fast Genome Assembler Using SHIMMER Index
  ☆101Updated 3 years ago
• edawson / gfakluge
  A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
  ☆54Updated 3 years ago
• mateidavid / fast5
  A C++ header-only library for reading Oxford Nanopore Fast5 files
  ☆53Updated 2 years ago
• ParBLiSS / PaSGAL
  Parallel Sequence to Graph Alignment
  ☆37Updated 2 years ago
• dnbaker / dashing2
  Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.
  ☆64Updated 11 months ago
• vgteam / gssw
  efficient alignment of strings to partially ordered string graphs
  ☆33Updated 3 years ago
• bcgsc / ntCard
  Estimating k-mer coverage histogram of genomics data
  ☆77Updated last year
• ncbi / magicblast
  ☆36Updated last month
• abiswas-odu / Disco
  Multi-threaded Distributed Memory Overlap-Layout-Consensus (OLC) Metagenome Assembler
  ☆24Updated 6 years ago
• COMBINE-lab / pufferfish
  An efficient index for the colored, compacted, de Bruijn graph
  ☆110Updated 8 months ago
• dnbaker / bonsai
  Bonsai: Fast, flexible taxonomic analysis and classification
  ☆70Updated last year
• Martinsos / opal
  SIMD C/C++ library for massive optimal sequence alignment (local/SW, infix, overlap, global)
  ☆38Updated last year
• mcveanlab / mccortex
  De novo genome assembly and multisample variant calling
  ☆112Updated 6 years ago
• natir / yacrd
  Yet Another Chimeric Read Detector
  ☆80Updated 7 months ago
• jasperlinthorst / reveal
  Graph based multi genome aligner
  ☆47Updated 3 years ago
• vpc-ccg / lordfast
  Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.
  ☆41Updated 5 years ago
• ksahlin / strobemers
  A repository for generating strobemers and evalaution
  ☆78Updated last year
• ekg / smithwaterman
  smith-waterman-gotoh alignment algorithm
  ☆17Updated 7 years ago
• will-rowe / hulk
  Histosketching Using Little Kmers
  ☆57Updated 2 years ago
• BioinformaticsToolsmith / MeShClust
  MeShClust: an intelligent tool for clustering DNA sequences
  ☆38Updated 3 years ago
• jeizenga / wfalm
  Refinements of the WFA alignment algorithm with better complexity
  ☆26Updated 3 years ago
• jltsiren / gbwt
  Substring index for paths in a graph
  ☆60Updated last month
• karel-brinda / ococo
  Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.
  ☆47Updated 6 years ago