Alternatives and similar repositories for swipe:

Users that are interested in swipe are comparing it to the libraries listed below

• yechengxi / DBG2OLC
  A genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long…
  ☆66Updated 4 years ago
• splatlab / squeakr
  Squeakr: An Exact and Approximate k -mer Counting System
  ☆85Updated last year
• cosmo-team / cosmo
  Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.
  ☆51Updated 11 months ago
• ParBLiSS / PaSGAL
  Parallel Sequence to Graph Alignment
  ☆35Updated 2 years ago
• ksahlin / strobemers
  A repository for generating strobemers and evalaution
  ☆77Updated 10 months ago
• marbl / MHAP
  MinHash Alignment Process (MHAP, pronounced MAP): locality-sensitive hashing to detect long-read overlaps and utilities
  ☆96Updated 2 years ago
• HingeAssembler / HINGE
  Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution"
  ☆64Updated 4 years ago
• lbcb-sci / graphmap2
  GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…
  ☆67Updated 2 years ago
• pmelsted / KmerStream
  Streaming algorithm for computing kmer statistics for massive genomics datasets
  ☆54Updated 5 years ago
• edawson / gfakluge
  A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
  ☆54Updated 2 years ago
• medvedevgroup / TwoPaCo
  A fast constructor of the compressed de Bruijn graph from many genomes
  ☆40Updated 2 weeks ago
• will-rowe / hulk
  Histosketching Using Little Kmers
  ☆55Updated last year
• ekg / fastahack
  utilities for indexing and sequence extraction from FASTA files
  ☆59Updated 3 years ago
• COMBINE-lab / pufferfish
  An efficient index for the colored, compacted, de Bruijn graph
  ☆107Updated 4 months ago
• seqan / raptor
  A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.
  ☆52Updated this week
• HKU-BAL / MegaGTA
  HMM-guided metagenomic gene-targeted assembler using iterative de Bruijn graphs
  ☆17Updated 8 years ago
• cschin / Peregrine
  Peregrine: Fast Genome Assembler Using SHIMMER Index
  ☆101Updated 3 years ago
• karel-brinda / ococo
  Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.
  ☆47Updated 6 years ago
• pairwise-alignment / pa-bench
  Benchmarking pairwise aligners
  ☆36Updated last week
• jermp / fulgor
  Fulgor is a fast and space-efficient colored de Bruijn graph index.
  ☆49Updated this week
• natir / yacrd
  Yet Another Chimeric Read Detector
  ☆75Updated 3 months ago
• vgteam / gssw
  efficient alignment of strings to partially ordered string graphs
  ☆33Updated 3 years ago
• lh3 / yak
  Yet another k-mer analyzer
  ☆127Updated 10 months ago
• bcgsc / ntCard
  Estimating k-mer coverage histogram of genomics data
  ☆77Updated last year
• RWilton / Arioc
  Arioc: GPU-accelerated DNA short-read alignment
  ☆67Updated last month
• yechengxi / Sparc
  ☆14Updated 6 years ago
• vpc-ccg / lordfast
  Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.
  ☆41Updated 5 years ago
• jltsiren / gcsa2
  BWT-based index for graphs
  ☆70Updated 3 months ago
• PacificBiosciences / pbbam
  PacBio BAM C++ library
  ☆21Updated last year
• broadinstitute / pyfrost
  Python bindings for Bifrost with a NetworkX compatible API
  ☆28Updated last year