DessimozLab / phylo-io
Phylo.IO JS tree viewer
☆28Updated this week
Alternatives and similar repositories for phylo-io:
Users that are interested in phylo-io are comparing it to the libraries listed below
- Bioinformatics tool outputs converter to JSON or YAML☆36Updated 4 months ago
- Protein Alignment and Detection Interface☆61Updated 11 months ago
- ☆25Updated last year
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- ☆28Updated 4 years ago
- Parse GFF3 into Pandas dataframes☆27Updated last year
- ☆26Updated 4 years ago
- A web-based "serverless" viewer of QIIME 2 Artifacts and Visualizations☆14Updated last year
- Exascale Maximum Likelihood (ExaML) code for phylogenetic inference using MPI☆50Updated 4 years ago
- Time-resolved metagenomic sequencing of Lenski's long-term evolution experiment with Escherichia coli☆23Updated 6 years ago
- Automated optimisation of de-novo transcriptome assembly☆25Updated 9 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 6 months ago
- An approximate sequence pattern matcher for FASTQ/FASTA files.☆30Updated 9 years ago
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆35Updated 2 years ago
- Malleable All-seeing Journal Of Research Artifacts☆36Updated last year
- Find Unique genomic Regions☆29Updated 2 months ago
- This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).☆15Updated 5 years ago
- NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.☆30Updated 4 months ago
- A JBrowse plugin to view multiple alignment format (MAF) files☆26Updated last year
- http://www.combio.pl/alfree☆23Updated 2 years ago
- SOAPdenovo-Trans, a de novo transcriptome assembler designed specifically for RNA-Seq. We evaluated its performance on transcriptome data…☆34Updated last year
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆32Updated 8 months ago
- NovoGraph: building whole genome graphs from long-read-based de novo assemblies☆45Updated 4 years ago
- GATB Minia assembly pipeline☆30Updated 2 years ago
- Convert genbank files to a swath of other formats☆16Updated last year
- ☆22Updated 10 months ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated last year
- The MG-RAST Backend -- the API server☆45Updated last year
- Interactive phylogenetic tree viewer/editor☆46Updated last year
- Reference-guided multiple sequence alignment of viral genomes☆65Updated 2 months ago