Genometric / MSPCLinks
Using combined evidence from replicates to evaluate ChIP-seq peaks
☆20Updated last month
Alternatives and similar repositories for MSPC
Users that are interested in MSPC are comparing it to the libraries listed below
Sorting:
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Updated 2 weeks ago
- interactive plots for differential expression analysis☆34Updated 6 months ago
- simplified cellranger for long-read data☆19Updated 4 months ago
- ☆34Updated last month
- ☆24Updated last year
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆37Updated last year
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆41Updated 3 years ago
- R package for DNA methylation analysis☆19Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Long read to rMATS☆32Updated 2 years ago
- Isoform-level functional RNA-Seq analysis 🧬☆35Updated last month
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆70Updated 3 weeks ago
- Deep learning-based structural variant filtering method☆39Updated 2 years ago
- structure detection program☆18Updated last year
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- A program for summarising CpG methylation patterns☆20Updated 9 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Updated 6 months ago
- SingleCell Nanopore sequencing data analysis☆62Updated 7 months ago
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆36Updated 3 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Flexible Bayesian inference of mutational signatures☆38Updated 2 years ago
- The Zavolab Automated RNA-seq Pipeline☆36Updated 5 months ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆32Updated 2 years ago
- ☆21Updated last year
- ☆23Updated 10 months ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated 3 weeks ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week