Genometric / MSPCLinks
Using combined evidence from replicates to evaluate ChIP-seq peaks
☆20Updated 2 months ago
Alternatives and similar repositories for MSPC
Users that are interested in MSPC are comparing it to the libraries listed below
Sorting:
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Updated this week
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆41Updated 3 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆37Updated last year
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- interactive plots for differential expression analysis☆34Updated 7 months ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Updated 7 months ago
- R package for DNA methylation analysis☆20Updated last year
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆40Updated 2 years ago
- ALFA: Annotation Landscape for Aligned Reads☆14Updated 5 years ago
- Indel caller for DNA-seq or RNA-seq☆16Updated 2 years ago
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆36Updated 3 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- MeRIP-seq analysis pipeline arranged multiple alignment tools, peakCalling tools, Merge Peaks' methods and methylation analysis methods.☆22Updated 4 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated last week
- chimeraviz is an R package that automates the creation of chimeric RNA visualizations.☆39Updated 2 years ago
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- Sashimi plots for RNA-seq data using detected transcripts☆31Updated 10 months ago
- ☆33Updated 3 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆30Updated 4 years ago
- Using k-mers to call HLA alleles in RNA sequencing data☆23Updated 7 years ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆32Updated 4 years ago
- ☆39Updated 4 years ago
- Versatile FASTA/FASTQ demultiplexer.☆33Updated last year
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆42Updated last year
- A tool for evaluating RNA seq mapping☆22Updated 6 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago
- Differential ATAC-seq toolkit☆28Updated 2 years ago
- Convert BAM files to bigWig files with a simple command☆20Updated 7 years ago
- Python program designed to reconstruct immunoglobulin gene rearrangements and oncogenic translocations from WGS, WES and capture NGS in l…☆21Updated 2 years ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆34Updated 2 years ago