leekgroup / networks_correctionLinks
Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"
☆16Updated 6 years ago
Alternatives and similar repositories for networks_correction
Users that are interested in networks_correction are comparing it to the libraries listed below
Sorting:
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated 2 years ago
- Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor☆22Updated this week
- ☆29Updated 11 months ago
- R package for benchmarking single cell analysis methods☆31Updated last year
- Gene-level general linear mixed model☆21Updated 5 months ago
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆29Updated last month
- A small R package to make sequencing read coverage plots in R.☆38Updated 2 years ago
- Functional enrichment analysis of high-throughput omics data☆20Updated 5 months ago
- ☆24Updated 2 weeks ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- rbioapi: User-Friendly R Interface to Biologic Web Services' API☆22Updated 4 months ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 4 years ago
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆21Updated last year
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated last year
- An R package for multi-dimensional pathway enrichment analysis☆16Updated 2 months ago
- Integrating zingeR with ZINB-WaVE weights☆24Updated 7 years ago
- A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries☆18Updated 5 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated last month
- A tidy interface for coverage analysis☆29Updated 5 years ago
- countsimQC - Compare characteristic features of count data sets☆27Updated 2 months ago
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆45Updated 2 years ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated last month
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆22Updated 2 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated 3 weeks ago
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆46Updated 7 months ago
- Explore design matrices interactively with R/Shiny☆37Updated 2 months ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 10 months ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 6 years ago
- Transcript quantification import with automatic metadata detection☆68Updated last month