Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"
☆16Apr 22, 2019Updated 7 years ago
Alternatives and similar repositories for networks_correction
Users that are interested in networks_correction are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆22Oct 27, 2021Updated 4 years ago
- ☆12Mar 31, 2026Updated 2 months ago
- Cluster-based analysis of CpG methylation☆13Jan 11, 2024Updated 2 years ago
- MATLAB implementation of Gene Set Enrichment Analysis (GSEA) method for finding pathways which can show more complex relation between cha…☆10Sep 7, 2022Updated 3 years ago
- Code to reproduce analysis and figures for 'Genetic mapping of etiologic brain cell types for obesity' (Timshel, eLife 2020)☆14May 20, 2021Updated 5 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Telomerecat: The telomere computational analysis tool☆14Oct 9, 2020Updated 5 years ago
- Various Ideas for Confounder Adjustment in Regression☆24May 8, 2023Updated 3 years ago
- Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)☆30Jul 26, 2015Updated 10 years ago
- Build an index for your BAM Index (BAI)☆17Apr 14, 2015Updated 11 years ago
- Quantify and interpret divers of variation in multilevel gene expression experiments☆81Mar 19, 2026Updated 2 months ago
- ARCHS4 RNA-seq processing scripts and web server pages.☆63Nov 26, 2020Updated 5 years ago
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆28Nov 20, 2025Updated 6 months ago
- Faster manipulation of dendrogram objects in R.☆15May 22, 2015Updated 11 years ago
- Helpers for "dplyr"'s "count" Function☆37Jun 29, 2018Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- R package for identifying differentially expressed genes from genome-wide gene expression profiling studies.☆22Jun 21, 2019Updated 6 years ago
- R data package for annotating/converting Gene IDs☆170Jul 6, 2025Updated 11 months ago
- workshop platform provider for running docker containers on kubernetes☆19Sep 14, 2021Updated 4 years ago
- ☆15May 31, 2020Updated 6 years ago
- ☆33Dec 2, 2022Updated 3 years ago
- Jupyter notebook repository for reproducing analysis in "DNA Methylation Landscape of the Mouse Brain at Single-Cell Resolution"☆14Apr 1, 2020Updated 6 years ago
- Tools for working with WGBS data☆14Jul 3, 2017Updated 8 years ago
- Ontoclick - A web browser extension to turn highlighted text into a proper Ontology term.☆13Jun 2, 2023Updated 3 years ago
- Instructions and analysis scripts for single cell Higher Order Testing (scHOT)☆10Oct 7, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- GSimp is a Gibbs sampler-based missing value imputation approach☆20Sep 13, 2020Updated 5 years ago
- ☆16Oct 16, 2017Updated 8 years ago
- My presentation at RStudio::conf(2019), Austin, Tx - "The lazy and easily distracted report writer"☆17Feb 5, 2019Updated 7 years ago
- Toolkit for metacell analysis☆23Aug 8, 2024Updated last year
- Immune evasion before tumor invasion in early squamous lung cell carcinogenesis☆17Jul 19, 2021Updated 4 years ago
- ☆12Dec 14, 2021Updated 4 years ago
- ☆23Mar 22, 2023Updated 3 years ago
- R package to estimate kinship and FST from SNP data☆21Jan 27, 2026Updated 4 months ago
- Computational biology utility scripts☆19Apr 16, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Survival analysis utility functions using functional programming principals☆11Jul 8, 2020Updated 5 years ago
- Experiments for "Scaling read aligners to hundreds of threads on general-purpose processors"☆11Jun 8, 2018Updated 8 years ago
- using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions☆55Jun 15, 2021Updated 4 years ago
- ☆32Jan 3, 2025Updated last year
- Single sample network reconstruction in R☆24Apr 6, 2020Updated 6 years ago
- Reinstall missing R packages☆50Nov 27, 2021Updated 4 years ago
- Reliable, scalable, efficient demultiplexing for single-cell RNA sequencing☆26Jul 20, 2025Updated 10 months ago