☆56Apr 6, 2020Updated 6 years ago
Alternatives and similar repositories for BatchEffectRemoval
Users that are interested in BatchEffectRemoval are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Various Ideas for Confounder Adjustment in Regression☆24May 8, 2023Updated 2 years ago
- Deep learning for single-cell transcript counts☆90Mar 14, 2025Updated last year
- Analysis code for a manuscript on community similarity computation☆14Apr 3, 2019Updated 7 years ago
- The C. elegans transcriptome at single cell resolution☆11Mar 28, 2018Updated 8 years ago
- ☆101Oct 1, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Chemometrics Toolbox for MATLAB☆12Apr 13, 2026Updated last week
- Visualize and perform a multitude of operations on newick files☆17Mar 7, 2022Updated 4 years ago
- SPADE: Spanning Tree Progression of Density Normalized Events☆49Aug 23, 2016Updated 9 years ago
- ☆20Mar 28, 2017Updated 9 years ago
- ☆29Feb 1, 2023Updated 3 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆14Aug 22, 2017Updated 8 years ago
- Representation Learning for detection of phenotype-associated cell subsets☆66Oct 24, 2020Updated 5 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Dec 14, 2021Updated 4 years ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆21Sep 8, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- NanoMod: a computational tool to detect DNA modifications using Nanopore long-read sequencing data☆38Feb 2, 2022Updated 4 years ago
- scaffold☆18Aug 13, 2018Updated 7 years ago
- A Python package for gene network analysis☆32Jun 22, 2022Updated 3 years ago
- Comparison of single-cell normalization methods using multiple datasets with ground-truth labels☆19Dec 2, 2019Updated 6 years ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Aug 11, 2020Updated 5 years ago
- Scalable, downsampling-free automated cell-population discovery, feature engineering, classification and visualization of single-cell (mo…☆12Aug 30, 2021Updated 4 years ago
- A collection of R code for dealing with SNP data and analyses☆24May 16, 2023Updated 2 years ago
- Subpopulation detection in high-dimensional single-cell data☆141Oct 22, 2020Updated 5 years ago
- ☆55Feb 19, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Connectivity Map analysis in MATLAB☆49Dec 10, 2021Updated 4 years ago
- ☆28Nov 21, 2019Updated 6 years ago
- Deep Feature Interaction Maps (DFIM)☆53Apr 9, 2019Updated 7 years ago
- Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"☆57Dec 15, 2018Updated 7 years ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 3 years ago
- ☆21Jul 4, 2017Updated 8 years ago
- R package for Empirical Bayes Factor Analysis.☆52Dec 4, 2024Updated last year
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆88Dec 4, 2025Updated 4 months ago
- Descriptive probabilistic marker gene approach to single-cell pseudotime inference☆31Nov 29, 2019Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆52Nov 5, 2022Updated 3 years ago
- post-clustering differential expression test☆36May 28, 2019Updated 6 years ago
- An interactive web portal for exploring immuno-oncology data. This repo now superseded by iatlas-app☆49Feb 26, 2021Updated 5 years ago
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆10Mar 13, 2021Updated 5 years ago
- countsimQC - Compare characteristic features of count data sets☆30Feb 7, 2026Updated 2 months ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆44Jul 6, 2020Updated 5 years ago
- Variational autoencoder for single cell RNA-seq datasets☆44Aug 15, 2017Updated 8 years ago