ushaham / BatchEffectRemovalLinks
☆56Updated 5 years ago
Alternatives and similar repositories for BatchEffectRemoval
Users that are interested in BatchEffectRemoval are comparing it to the libraries listed below
Sorting:
- ☆48Updated 6 years ago
- ☆51Updated last year
- Wasserstein Generative Adversarial Network for analysing scRNAseq data☆34Updated 4 years ago
- Accurate and robust imputation of scRNA-seq data☆96Updated 6 years ago
- Implementations in both Matlab and R of the SIMLR method. The manuscript of the method is available at: https://www.nature.com/articles/n…☆113Updated 4 months ago
- ☆29Updated 2 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"☆58Updated 5 years ago
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆40Updated 3 years ago
- R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.☆66Updated 7 years ago
- Deep learning for identifying cis-regulatory elements and other applications☆34Updated 8 years ago
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆56Updated 2 years ago
- ☆16Updated 8 years ago
- easy access to benchmark datasets☆50Updated 7 years ago
- Single-cell Hierarchical Poisson Factorization☆73Updated 3 years ago
- Generate cellular maps of differentiation manifolds with complex topologies.☆27Updated 7 years ago
- An accurate and efficient deep learning method for single-cell RNA-seq data imputation☆89Updated 3 years ago
- Variational autoencoder for single cell RNA-seq datasets☆44Updated 8 years ago
- Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data☆33Updated 8 years ago
- This contains the dataset for comparing scRNA-seq analysis methods☆91Updated 5 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Updated 4 years ago
- Single-cell RNA-seq Gene Expression Recovery☆111Updated 9 months ago
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 6 years ago
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆107Updated 2 years ago
- Zero-inflated dimensionality reduction algorithm for single-cell data☆110Updated 5 years ago
- ACTIONet single-cell analysis framework☆42Updated 11 months ago
- Deep Embedding for Single-cell Clustering☆87Updated last year
- Clustering through Imputation and Dimensionality Reduction☆63Updated 7 years ago
- Fast motif matching in R☆46Updated last year