Alternatives and similar repositories for BatchEffectRemoval:

Users that are interested in BatchEffectRemoval are comparing it to the libraries listed below

• AltschulerWu-Lab / scScope
  ☆49Updated 5 years ago
• bioFAM / slalom
  ☆28Updated last year
• lkmklsmn / insct
  scRNAseq integration with triplet neural networks
  ☆39Updated 2 years ago
• rhondabacher / ISMB2019_SingleCellTutorial
  Tutorials and code for ISMB 2019 short course on Recent Advances in Statistical Methods and Computational Algorithms for Single-Cell Omic…
  ☆39Updated 5 years ago
• lanagarmire / NMFEM
  ☆15Updated 7 years ago
• KlugerLab / ALRA
  Imputation method for scRNA-seq based on low-rank approximation
  ☆75Updated last year
• Vivianstats / scImpute
  Accurate and robust imputation of scRNA-seq data
  ☆95Updated 5 years ago
• SchulzLab / TEPIC
  Annotation of genomic regions using transcription factor binding sites and epigenetic data
  ☆40Updated 2 years ago
• MarioniLab / MNN2017
  Code for the MNN manuscript figures
  ☆51Updated 6 years ago
• Dongwon-Lee / lsgkm
  ☆50Updated last year
• sandhya212 / BISCUIT_SingleCell_IMM_ICML_2016
  R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.
  ☆65Updated 6 years ago
• markrobinsonuzh / scRNAseq_clustering_comparison
  A study to compare methods for clustering of scRNA-seq data
  ☆42Updated 6 months ago
• smaslova / AI-TAC
  ☆26Updated last year
• czi-hca-comp-tools / easy-data
  easy access to benchmark datasets
  ☆50Updated 6 years ago
• WeiqiangZhou / BIRD
  Big data Regression for predicting DNase I hypersensitivity
  ☆30Updated 5 months ago
• wgmao / PLIER
  Pathway-Level Information Extractor (PLIER): a generative model for gene expression data
  ☆53Updated 5 months ago
• slowkow / tftargets
  Human transcription factor target genes from 6 databases in convenient R format.
  ☆86Updated 6 years ago
• decomverse / ACTIONet
  ACTIONet single-cell analysis framework
  ☆37Updated 4 months ago
• yanailab / moana
  Moana: Robust cell type classification of single-cell RNA-Seq data
  ☆24Updated 6 years ago
• zhanglhbioinfor / DIRECT-NET
  ☆10Updated last year
• jingshuw / SAVERX
  R package for transfer learning of single-cell RNA-seq denoising
  ☆29Updated 2 years ago
• theislab / pseudodynamics
  Dynamic models for single-cell RNA-seq time series.
  ☆39Updated 6 years ago
• yycunc / SAMEclustering
  SAME (Single-cell RNA-seq Aggregated clustering via Mixture model Ensemble): Cluster ensemble for single-cell RNA-seq data
  ☆14Updated 3 years ago
• luslab / arshamg-scrnaseq-wgan
  Wasserstein Generative Adversarial Network for analysing scRNAseq data
  ☆34Updated 4 years ago
• LuyiTian / sc_mixology
  This contains the dataset for comparing scRNA-seq analysis methods
  ☆90Updated 4 years ago
• yanailab / knn-smoothing
  K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data
  ☆53Updated 2 years ago
• willtownes / scrna2019
  supporting code for the multinomial single cell RNA-Seq paper
  ☆51Updated 4 years ago
• simslab / scHPF
  Single-cell Hierarchical Poisson Factorization
  ☆67Updated 2 years ago
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆78Updated 3 months ago
• jzhoulab / quasildr
  Quasilinear data representations for single-cell omics data analysis
  ☆42Updated last year