Guide for the Differential Expression Analysis of RNAseq data using DESeq2
☆25Nov 14, 2018Updated 7 years ago
Alternatives and similar repositories for DESeq2
Users that are interested in DESeq2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- DESeq2 or edgeR☆22Sep 28, 2016Updated 9 years ago
- A bioinformatics toolset for multiomic analysis☆20May 19, 2026Updated last month
- Shiny-Seq: A web based interactive pipeline to analyze RNA-Seq data☆14Jan 14, 2018Updated 8 years ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Jul 3, 2025Updated 11 months ago
- a fork of the gap-closing pipeline PBJelly☆15Jan 7, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆11Aug 3, 2018Updated 7 years ago
- Analysis code for the TAP-seq manuscript.☆11Jun 25, 2021Updated 4 years ago
- Analysis of Single Cell Expression, Normalization and Differential expression☆14Feb 29, 2020Updated 6 years ago
- a web-based R shiny application that wraps DESeq2 R package☆13Apr 19, 2020Updated 6 years ago
- An R package to help in plotting PCA results nicely.☆12Jan 16, 2020Updated 6 years ago
- Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"☆11Sep 30, 2019Updated 6 years ago
- GENome Organisation Visual Analytics☆16Dec 24, 2021Updated 4 years ago
- R package with Shiny application for DGE analysis☆12Jan 8, 2024Updated 2 years ago
- ☆16Apr 17, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Published at Bioinformatics☆12Jul 4, 2024Updated last year
- rbioapi: User-Friendly R Interface to Biologic Web Services' API☆24Jan 26, 2026Updated 4 months ago
- Software to process, statistically analyse and visualise deep mutational scanning data☆14Apr 28, 2026Updated last month
- ☆25Aug 5, 2025Updated 10 months ago
- Standalone shiny server container for viewing CellChat object☆14Feb 18, 2021Updated 5 years ago
- UZH BIO392: Bioinformatics of Sequence Variation Course Repository☆14May 29, 2026Updated 2 weeks ago
- Visualization of Functional Enrichment Result☆258Apr 29, 2026Updated last month
- fastx-utils using klib☆19Sep 1, 2020Updated 5 years ago
- Bioinformatics lecture slides 2014☆11Jun 26, 2016Updated 9 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Galaxy Docker Image for the HiCExplorer☆11Mar 3, 2019Updated 7 years ago
- R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)☆25May 12, 2025Updated last year
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆30May 10, 2018Updated 8 years ago
- scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers☆22Sep 28, 2021Updated 4 years ago
- ☆25Apr 29, 2018Updated 8 years ago
- A repo hosting the combined lectures of a course on Fundamentals of Computational Biology☆14Jul 4, 2023Updated 2 years ago
- Differential gene expression analysis on RNA-seq data☆13Apr 26, 2024Updated 2 years ago
- Exercises for training scientists to perform some RNA-seq analyses.☆11Oct 7, 2019Updated 6 years ago
- Resources for Drug Repurposing In Alzheimer's Disease (DRIAD) work☆11Mar 4, 2021Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- NGS Tutorial☆15Apr 22, 2017Updated 9 years ago
- In-silico doublet annotation for single cell RNA sequencing data☆11Jan 7, 2026Updated 5 months ago
- Execute shell commands with your hubot.☆13Oct 12, 2018Updated 7 years ago
- Nextflow pipeline that runs DESeq2 on data processed with the nextflow RNAseq pipeline☆13Dec 2, 2025Updated 6 months ago
- Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data☆33Oct 25, 2013Updated 12 years ago
- Script for removing or counting invariant sites for the RAxML ascertainment bias corrections☆16Oct 12, 2024Updated last year
- These are the official datasets used on the Medicare.gov Hospital Compare Website provided by the Centers for Medicare & Medicaid Service…☆10Mar 12, 2018Updated 8 years ago