TomKellyGenetics / graphsimLinks
R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)
☆24Updated 4 months ago
Alternatives and similar repositories for graphsim
Users that are interested in graphsim are comparing it to the libraries listed below
Sorting:
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆28Updated 2 years ago
- Explore the cancer relevance of your gene list☆52Updated 6 months ago
- ☆17Updated last year
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- A Shiny web server for interactive visualization and analysis of RNA-seq data☆22Updated 4 years ago
- The KEGGgraph package to parse KEGG pathways in R into graph objects☆14Updated 5 months ago
- Cancer Dependency Map package☆30Updated last year
- This is the ensembldb development repository.☆35Updated 3 weeks ago
- Toolbox package for organizing and working with TCGA data☆28Updated 2 months ago
- Code associated with MIX-seq manuscript☆15Updated 5 years ago
- rbioapi: User-Friendly R Interface to Biologic Web Services' API☆22Updated 2 months ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆62Updated 2 months ago
- An R package for analyzing high-dimensional cytometry data using the tidyverse.☆19Updated last year
- Tutorial for the analysis of scRNA-seq data in R☆18Updated 7 years ago
- CellAnn☆12Updated last year
- Multi-omics data normalisation, model fitting and visualisation.☆27Updated 2 years ago
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆27Updated 5 months ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Updated 2 years ago
- Full annotation using shape-constrained trees☆26Updated 2 years ago
- GEO RNA-seq Experiments Processing Pipeline☆21Updated 5 years ago
- Template for building a bioconductor workshop package using github actions☆21Updated 2 months ago
- Bayesian modelling of DNA methylation heterogeneity at single-cell resolution☆23Updated last year
- Trans-association between HLA and TCR-CDR3☆18Updated 2 years ago
- Core utilities for single-cell RNA-seq☆12Updated 5 months ago
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆14Updated 2 years ago
- ☆25Updated 3 months ago
- Gene-level general linear mixed model☆22Updated 7 months ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆20Updated 4 months ago
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆29Updated 2 years ago