TomKellyGenetics / graphsimLinks
R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)
☆24Updated 2 months ago
Alternatives and similar repositories for graphsim
Users that are interested in graphsim are comparing it to the libraries listed below
Sorting:
- rbioapi: User-Friendly R Interface to Biologic Web Services' API☆22Updated last month
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- Cancer Dependency Map package☆30Updated 11 months ago
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆28Updated 2 years ago
- A Shiny web server for interactive visualization and analysis of RNA-seq data☆22Updated 4 years ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆62Updated last month
- This is the ensembldb development repository.☆35Updated 11 months ago
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆27Updated 4 months ago
- Toolbox package for organizing and working with TCGA data☆28Updated 3 weeks ago
- ☆12Updated last year
- ☆18Updated this week
- Multi-omics data normalisation, model fitting and visualisation.☆26Updated 2 years ago
- Single Cell multimodal data scripts for downloading datasets☆17Updated last month
- Prioritizing Cancer Driver Genes Using Genomics Data☆17Updated last year
- A Bioconductor package to retrieve and analyze data from the Human Protein Atlas☆36Updated 2 months ago
- Template for building a bioconductor workshop package using github actions☆20Updated last month
- Dimensionality reduction and batch integration methods for single cell data☆16Updated 2 years ago
- Full annotation using shape-constrained trees☆25Updated last year
- Explore the cancer relevance of your gene list☆51Updated 5 months ago
- ☆25Updated 2 months ago
- Gene-level general linear mixed model☆22Updated 6 months ago
- Linseed: LINear Subspace identification for gene Expresion Deconvolution☆30Updated 2 months ago
- An R Package for Geneset Enrichment Workflows☆76Updated 2 months ago
- The KEGGgraph package to parse KEGG pathways in R into graph objects☆14Updated 3 months ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆23Updated 6 years ago
- digitalDLSorteR: An R package to deconvolute bulk RNA-Seq using scRNA-Seq data☆13Updated 9 months ago
- Tutorial for the analysis of scRNA-seq data in R☆18Updated 6 years ago
- Interactive benchmarking of ranking and assignment methods☆16Updated 2 weeks ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment☆33Updated 2 weeks ago