StoreyLab / edgeLinks
R package for identifying differentially expressed genes from genome-wide gene expression profiling studies.
☆21Updated 5 years ago
Alternatives and similar repositories for edge
Users that are interested in edge are comparing it to the libraries listed below
Sorting:
- An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension☆13Updated 2 months ago
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Updated 6 years ago
- Genomic plot in trellis layout☆40Updated last year
- A small R package to make sequencing read coverage plots in R.☆38Updated 2 years ago
- QTL analysis software for high-dimensional data and complex cross designs☆34Updated this week
- Glimma R package☆50Updated 9 months ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- R/Package Version Check☆23Updated 3 years ago
- An R package for import, QC and analysis of Illumina Infinium genotyping arrays☆34Updated 7 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆41Updated 7 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Bioconductor package that makes BIG data pint-sized.☆21Updated last year
- TOP results by CONfident efFECT Sizes.☆14Updated 5 months ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated last year
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated last year
- ☆29Updated 10 months ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Make rapid visualizations of RNA-seq data in R☆19Updated 5 years ago
- Guangchuang Yu's CV☆44Updated 5 months ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- fastqcr: Quality Control of Sequencing Data☆73Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 10 months ago
- R package providing Variance Stabilizing Transformations appropriate for RNA-Seq data☆20Updated 2 weeks ago
- gkmSVM R package☆17Updated 7 years ago
- ☆22Updated 8 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆28Updated 2 months ago
- Tutorial to reproduce the analysis of Peixoto et al. (2015)☆9Updated 9 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year