Alternatives and similar repositories for edge

Users that are interested in edge are comparing it to the libraries listed below

• kkdey / Logolas
  R package for Enrichment Depletion Logos (EDLogos) and String Logos
  ☆27Updated 7 years ago
• Shians / Glimma
  Glimma R package
  ☆50Updated last year
• lindsayrutter / bigPint
  Bioconductor package that makes BIG data pint-sized.
  ☆21Updated last year
• ctb / 2019-snakemake-ucdavis
  Intro to workflows for efficient automated data analysis, using snakemake.
  ☆32Updated 6 years ago
• thelovelab / tximeta
  Transcript quantification import with automatic metadata detection
  ☆67Updated 3 weeks ago
• lpantano / DEGreport
  Create a cromphensive report of DEG list coming from any analysis of RNAseq data
  ☆26Updated 2 months ago
• Bioconductor / Biostrings
  Efficient manipulation of biological strings
  ☆65Updated 3 weeks ago
• markrobinsonuzh / TreeSummarizedExperiment
  An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension
  ☆14Updated 5 months ago
• kassambara / fastqcr
  fastqcr: Quality Control of Sequencing Data
  ☆76Updated 2 years ago
• carpentries-incubator / bioc-project
  Introduction to the Bioconductor project
  ☆18Updated 2 months ago
• jtleek / sva-devel
  ☆28Updated last year
• gschofl / reutils
  Talk to the NCBI EUtils
  ☆22Updated 5 years ago
• kdkorthauer / dmrseq
  R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing
  ☆62Updated 8 months ago
• kauralasoo / wiggleplotr
  A small R package to make sequencing read coverage plots in R.
  ☆40Updated last week
• zhanxw / seqminer
  Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R
  ☆32Updated 3 months ago
• shaunpwilkinson / kmer
  K-mer Counting for Biological Sequence Analysis
  ☆27Updated 6 years ago
• price0416 / DEvis
  DEvis: an R package for aggregation and visualization of differential expression data
  ☆20Updated 5 years ago
• friend1ws / pmsignature
  R package for extracting mutation signatures from a list of somatic mutations
  ☆37Updated 6 years ago
• Gibbons-Lab / mbtools
  R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.
  ☆24Updated last year
• pfh / topconfects
  TOP results by CONfident efFECT Sizes.
  ☆15Updated last year
• andrewparkermorgan / argyle
  An R package for import, QC and analysis of Illumina Infinium genotyping arrays
  ☆35Updated 7 years ago
• lamortenera / bamsignals
  R package to quickly obtain count vectors from indexed bam files
  ☆15Updated 6 months ago
• tpq / propr
  [OFFICIAL] [CoDA] An R package to calculate proportionality and other measures for compositional data
  ☆77Updated last month
• jokergoo / gtrellis
  Genomic plot in trellis layout
  ☆42Updated last year
• itsvenu / ALPS
  AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project
  ☆16Updated 2 years ago
• brentp / 450k-analysis-guide
  A Practical (And Opinionated) Guide To Analyzing 450K Data
  ☆35Updated 11 years ago
• Bioconductor / SummarizedExperiment
  A container (S4 class) for matrix-like assays
  ☆36Updated 2 months ago
• simonvh / fluff
  Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…
  ☆71Updated last year
• UMMS-Biocore / debrowser
  Differential Count Data Analysis Toolbox
  ☆61Updated last year
• BIMSBbioinfo / pigx_rnaseq
  Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline
  ☆20Updated last year