R package for identifying differentially expressed genes from genome-wide gene expression profiling studies.
☆21Jun 21, 2019Updated 7 years ago
Alternatives and similar repositories for edge
Users that are interested in edge are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- logistic factor analysis☆16Jan 29, 2026Updated 9 months ago
- TeraStructure is a new algorithm to fit Bayesian models of genetic variation in human populations on tera-sample-sized data sets (10^12 o…☆49Jan 1, 2020Updated 6 years ago
- Statistical Inference for Unsupervised Learning☆17Apr 7, 2026Updated 6 months ago
- R package to estimate kinship and FST from SNP data☆21Jan 27, 2026Updated 9 months ago
- Assessing the increase in power from increasing read depth in a given RNA-Seq study☆14May 13, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- R package to estimate q-values and false discovery rate quantities.☆122Sep 1, 2023Updated 3 years ago
- A Nextflow pipeline for running synteny analysis.☆20Aug 2, 2026Updated 2 months ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Apr 22, 2019Updated 7 years ago
- Subsampling of high-throughput sequencing count data☆20May 10, 2019Updated 7 years ago
- Analysis for svaseq paper☆20Aug 20, 2014Updated 12 years ago
- Flame: Functional enrichment analysis using multiple gene lists☆13May 21, 2025Updated last year
- An R package to help in plotting PCA results nicely.☆12Jan 16, 2020Updated 6 years ago
- Differential Expression with Capture Efficiency adjustmeNT☆16Jan 3, 2023Updated 3 years ago
- Knockoff-based analysis of GWAS summary statistics data☆11Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆32May 25, 2021Updated 5 years ago
- Build an index for your BAM Index (BAI)☆17Apr 14, 2015Updated 11 years ago
- Cluster Evaluation R package (ClueR) for detecting key signaling events from time-series phosphoproteomics data☆11Jan 10, 2024Updated 2 years ago
- ☆13Dec 23, 2013Updated 12 years ago
- A pipeline creation tool using Snakemake☆14Updated this week
- Programming for Biology Class @ CSHL 2022☆14Oct 4, 2024Updated 2 years ago
- Differential expression of RNA-seq data using the Negative Binomial☆486Oct 1, 2026Updated 3 weeks ago
- Experiments for "Scaling read aligners to hundreds of threads on general-purpose processors"☆11Jun 8, 2018Updated 8 years ago
- four class intro to R: basic syntax, data manipulation, data viz☆22Dec 31, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆14Jul 26, 2024Updated 2 years ago
- Killifish genomics scripts☆12Feb 19, 2021Updated 5 years ago
- FlashRNA - An Efficient Model for Regulatory Genomics☆19Oct 15, 2025Updated last year
- ☆12May 30, 2023Updated 3 years ago
- Analysis of RNA seq data to explore gene expression in different types of cancer☆10Oct 5, 2018Updated 8 years ago
- Code for the empty droplet and cell detection project from the HCA Hackathon.☆21Feb 26, 2019Updated 7 years ago
- Faster manipulation of dendrogram objects in R.☆15May 22, 2015Updated 11 years ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆19Feb 5, 2022Updated 4 years ago
- MSigDB gene sets for multiple organisms in a tidy data format☆91Aug 20, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- An R package for the spatial analysis of population genetic data.☆20Oct 23, 2026Updated last week
- Force Field X development has moved to the SchniedersLab area of GitHub.☆17Oct 4, 2019Updated 7 years ago
- Collection of tutorials to build RNA-KG v2.0 from scratch and for reproducing experiments such as "context-aware" KG pruning, clustering,…☆29Aug 7, 2026Updated 2 months ago
- Code to reproduce analysis and figures for 'Genetic mapping of etiologic brain cell types for obesity' (Timshel, eLife 2020)☆14May 20, 2021Updated 5 years ago
- a take on ordination plots using ggplot2☆66Jul 22, 2024Updated 2 years ago
- Metagenomics Workshop☆27Nov 23, 2016Updated 9 years ago
- ☆10Oct 17, 2019Updated 7 years ago