Multifastats: Multi-Fasta Sequence Stats. Free python-based program that, from a set of a set of 'fasta' sequences (as group or individually), produces basic outputs and statistics (N50, %GC, molecular weight, cut in kmers and concatenate sequences using defined spacers). And also allows to apply some filters and select subgroups by length and/o…
☆10Feb 21, 2018Updated 8 years ago
Alternatives and similar repositories for multifastats
Users that are interested in multifastats are comparing it to the libraries listed below
Sorting:
- Population assignment analysis using R☆15Jul 4, 2025Updated 8 months ago
- 生物信息学入门的系列课程，包括Linux, shell, Python 编程，建库测序，基因组学，以及系统进化，常用软件使用等内容。☆22Sep 16, 2021Updated 4 years ago
- Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs☆20Sep 18, 2019Updated 6 years ago
- Software package for in silico simulation and testing of double digest RADseq experiments.☆19Sep 24, 2020Updated 5 years ago
- 这个是我画图的一些数据和代码还有结果☆26Dec 9, 2021Updated 4 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Sep 24, 2015Updated 10 years ago
- Toolkit for evolutionary analyses of linkage groups☆33Jul 17, 2024Updated last year
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Oct 26, 2018Updated 7 years ago
- Phylogenomics from Low-coverage Whole-genome Sequencing☆39Aug 21, 2020Updated 5 years ago
- polysat 1.7: tools for polyploid microsatellite analysis☆12Dec 20, 2024Updated last year
- Package to design primers for MutaSeq and related methods☆11Jan 15, 2021Updated 5 years ago
- Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS☆10Jul 20, 2017Updated 8 years ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated last year
- A tutorial for the free Inkscape cross-platform vector graphics editor.☆13Oct 4, 2016Updated 9 years ago
- Python script for calling SNPs, MNPs, and indels in mitochondrial DNA.☆10Apr 19, 2016Updated 9 years ago
- ☆11Mar 13, 2012Updated 13 years ago
- various sources and scripts for genomic research software☆10May 11, 2015Updated 10 years ago
- A couple of tools I find indispensable for post orthomcl down-stream analysis.☆11Oct 2, 2019Updated 6 years ago
- FAOSTAT public API.☆11Dec 12, 2016Updated 9 years ago
- This repository is some small projects for DannyWu learning python crawlers.Welcome your visit and hope to learn together!☆10Dec 12, 2021Updated 4 years ago
- A tool for identification of plant long non-coding RNAs.☆10Aug 8, 2023Updated 2 years ago
- Phylogenetic iDentification of Subgenomes☆10Jul 7, 2022Updated 3 years ago
- ☆10Aug 29, 2012Updated 13 years ago
- ☆10Jul 1, 2020Updated 5 years ago
- A dark scala syntax highlighter for Notepad++☆15Aug 9, 2011Updated 14 years ago
- A powerful Perl module for simulating the genome digestions by restriction enzymes☆14Sep 10, 2024Updated last year
- ☆10Dec 16, 2024Updated last year
- Analysis of co-expression networks from RNA-seq data☆11Apr 6, 2017Updated 8 years ago
- Lectures and Lab Exercises for Biochem 3BP3 Practical Bioinformatics for the Genomics Era☆15Nov 27, 2025Updated 3 months ago
- This is code for running Orthofinder -> PAML☆12Jul 27, 2016Updated 9 years ago
- Overlapped primer design for entire coding sequence of the gene with specificity check☆13Feb 22, 2022Updated 4 years ago
- Retrieve sequences flanked by an arbitrary number of primers from a nucleotide collection.☆11Jun 11, 2021Updated 4 years ago
- ☆13Nov 29, 2022Updated 3 years ago
- Bioinformatics Pipeline☆12Oct 7, 2022Updated 3 years ago
- ☆14Aug 31, 2016Updated 9 years ago
- ☆14Jul 13, 2020Updated 5 years ago
- TRAPPIST: Totally Rad Analysis Pipelines Python Informatics Super Tool (actually, a python-based genomics analysis toolbox)☆14Jan 25, 2018Updated 8 years ago
- Downsample fastq files in an automated way☆12May 7, 2020Updated 5 years ago
- ☆13Aug 30, 2023Updated 2 years ago