davidrequena / multifastatsLinks
Multifastats: Multi-Fasta Sequence Stats. Free python-based program that, from a set of a set of 'fasta' sequences (as group or individually), produces basic outputs and statistics (N50, %GC, molecular weight, cut in kmers and concatenate sequences using defined spacers). And also allows to apply some filters and select subgroups by length and/o…
☆11Updated 7 years ago
Alternatives and similar repositories for multifastats
Users that are interested in multifastats are comparing it to the libraries listed below
Sorting:
- Documentation for Evolview☆29Updated 4 years ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆53Updated 5 years ago
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆38Updated 2 years ago
- Workflow for Building Microsynteny Networks☆58Updated 3 years ago
- ☆14Updated 5 years ago
- NLR-Annotator upload☆76Updated 2 years ago
- SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …☆93Updated last month
- A novel genome assembly pipeline based on deep learning☆67Updated last year
- Neural network classification of TE☆97Updated 3 months ago
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆90Updated last year
- A pipeline used to identify different modes of duplicated gene pairs☆116Updated 5 months ago
- Phylogenomics from Low-coverage Whole-genome Sequencing☆38Updated 5 years ago
- ☆85Updated last year
- Plastid Genome Annotator☆54Updated 5 years ago
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆51Updated last year
- MitoDNA extending assembler from NGS data☆22Updated 4 months ago
- Automates running of OrthoMCL software from http://orthomcl.org/common/downloads/software/v2.0/☆80Updated 5 years ago
- A tool for plotting CAFE5 gene family expansion/contraction result☆35Updated 2 years ago
- Python package and CLI for whole-genome duplication related analyses. **This package is deprecated in favor of** https://github.com/heche…☆86Updated this week
- Mapping pipeline for data generated using Arima-HiC☆81Updated last year
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆85Updated 4 years ago
- Algorithm For Gene Order Reconstruction in Ancestors☆78Updated 4 months ago
- DNA序列比对结果 可视化展示工具☆57Updated 3 years ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆110Updated 4 months ago
- ☆88Updated last month
- ☆75Updated 5 years ago
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆70Updated 9 months ago
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆40Updated 5 years ago
- ☆77Updated 6 years ago
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…☆102Updated 4 months ago