Gege7177 / Dot2dotLinks
Dot2dot: Accurate Whole-Genome Tandem Repeats Discovery
☆11Updated 3 years ago
Alternatives and similar repositories for Dot2dot
Users that are interested in Dot2dot are comparing it to the libraries listed below
Sorting:
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- ☆31Updated 6 years ago
- ☆33Updated last year
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 5 years ago
- ☆44Updated last year
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago
- A scaffold assembling pipeline for stLFR reads.☆14Updated 4 years ago
- Variant annotation and merging pipeline☆42Updated 6 months ago
- ☆36Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- SV genotyping with long reads☆40Updated 2 years ago
- A pipeline for isoseq☆23Updated 7 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 8 years ago
- methods for orphan gene prediction paper optimization☆25Updated 4 years ago
- Scripts for NGS processing☆17Updated 8 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- ☆51Updated 6 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆39Updated 2 years ago
- ☆38Updated 4 months ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆21Updated last year
- Structural variant merging tool☆57Updated last year
- Genome-wide scan for balancing selection using beta statistic☆32Updated 2 years ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆24Updated 5 years ago
- Method to optimally select samples for validation and resequencing☆30Updated 4 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Updated 2 years ago
- Haplotype and population structure inference using neural networks.