databio / pypiper

Related projects: ⓘ

• pepkit / peppy
  Project metadata manager for PEPs in Python
  ☆37Updated last week
• brentp / python-giggle
  python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.
  ☆16Updated 6 years ago
• panoptes-organization / panoptes
  Monitor computational workflows in real time
  ☆65Updated 3 months ago
• pepkit / looper
  A job submitter for Portable Encapsulated Projects
  ☆20Updated last week
• lgautier / fastq-and-furious
  Efficient handling of FASTQ files from Python
  ☆50Updated 2 weeks ago
• mdshw5 / simplesam
  Simple pure Python SAM parser and objects for working with SAM records
  ☆62Updated 2 years ago
• loosolab / UROPA
  Universal RObust Peak Annotator
  ☆15Updated 9 months ago
• schlegelp / catheat
  Plot categorical heatmaps with seaborn
  ☆18Updated 2 years ago
• brentp / fishers_exact_test
  Fishers Exact Test for Python (Cython)
  ☆63Updated 2 weeks ago
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆32Updated 4 years ago
• kundajelab / genomelake
  Simple and efficient access to genomic data for deep learning models.
  ☆43Updated 4 years ago
• chanzuckerberg / ExpressionMatrix2
  Software for exploration of gene expression data from single-cell RNA sequencing.
  ☆28Updated 5 years ago
• lemieuxl / pyplink
  Python module to read binary Plink files.
  ☆16Updated 3 months ago
• broadinstitute / genepy
  Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python
  ☆19Updated last year
• lucapinello / Haystack
  Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
  ☆30Updated 6 years ago
• seqcode / miniMDS
  ☆28Updated 2 months ago
• kundajelab / simdna
  A python library for creating simulated regulatory DNA sequences
  ☆38Updated last year
• theislab / batchglm
  Fit generalized linear models in python.
  ☆27Updated last year
• LUMC / pytest-workflow
  Configure workflow/pipeline tests using yaml files.
  ☆63Updated last month
• asrhou / scMatch
  scMatch: a single-cell gene expression profile annotation tool using reference datasets
  ☆23Updated 2 years ago
• pyranges / bamread
  Bam to Pandas DataFrame, quickly
  ☆13Updated 2 weeks ago
• cgat-developers / cgat-core
  Core functionality of the CGAT code
  ☆31Updated 2 weeks ago
• statbiophys / SONIA
  Infer selection pressures on features of amino acid CDR3 sequences.
  ☆23Updated 5 months ago
• EliLillyCo / pytest-wdl
  WDL plugin for pytest
  ☆48Updated last year
• COMBINE-lab / pyroe
  ☆15Updated 7 months ago
• higlass / higlass-python
  Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer
  ☆51Updated 4 months ago
• brentp / bw-python
  python wrapper to dpryan79's bigwig library using cffi
  ☆19Updated 8 years ago
• BD2KGenomics / toil-rnaseq
  UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline
  ☆38Updated 4 years ago
• shwhalen / ml-pitfalls
  Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"
  ☆41Updated 11 months ago
• daler / metaseq
  Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data
  ☆87Updated 4 years ago