koksal / tps
Temporal Pathway Synthesizer
☆17Updated 6 months ago
Alternatives and similar repositories for tps:
Users that are interested in tps are comparing it to the libraries listed below
- Parsing MHC nomenclature in the wild☆16Updated 3 months ago
- Probabilistic HLA typing☆35Updated 5 years ago
- Sparse Signaling Pathway Sampling: MCMC for signaling pathway inference☆14Updated 2 years ago
- Proteins as words, genomes as documents.☆20Updated 4 years ago
- Library for visualising genomic features in Python.☆15Updated 7 years ago
- Altered TCR Ligand Affinities and Structures☆10Updated last year
- Single cell network synthesis toolkit☆23Updated 3 years ago
- Bioinformatics algorithms: Needleman-Wunsch, Feng-Doolittle, Gotoh and Nussinov implemented in Python☆18Updated 8 years ago
- The official Inferelator repository maintained by current or former Bonneau lab members☆9Updated 7 years ago
- Align sequences and then parse features.☆17Updated 4 months ago
- Analyzing RNA-Seq with approximate likelihood☆26Updated 4 years ago
- Explore and analyze biological sequence data☆16Updated 5 months ago
- Useful functions for manipulating Multiplex Assay of Variant Effect datasets.☆10Updated 8 months ago
- This BLENDER has been sunsetted☆16Updated 3 months ago
- A simple, intuitive and Efficient single cell binary Data Storage format☆15Updated 5 years ago
- R package for obtaining TCR alpha-beta sequence pairs☆8Updated 7 years ago
- Calculate indel trajectory likelihoods using methods of Miklós, Lunter & Holmes (2004), De Maio (2020), and Holmes (2020)☆14Updated 2 years ago
- Bam to Pandas DataFrame, quickly☆13Updated 4 months ago
- Bayesian co-estimation of phylogenies and multiple alignments via MCMC☆46Updated this week
- Bioinformatics Open Source Sequence machine☆33Updated last year
- A Bio2BEL package for integrating pathway-related information from KEGG in BEL☆13Updated 2 years ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆17Updated 3 years ago
- Repository for code for mapping sequence data to structural datasets.☆8Updated 5 years ago
- Summary statistics for repertoires☆16Updated last year
- ☆21Updated 8 years ago
- Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)☆14Updated 8 years ago
- ChIP-seq peak calling with GC effects adjustment☆9Updated 6 years ago
- A specification and Python implementation for representing variants from Multiplexed Assays of Variant Effect.☆11Updated last month
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆16Updated 6 months ago