databio / AIListLinks
Augmented interval list (AIList): a novel data structure for efficient genomic interval search
☆23Updated 3 years ago
Alternatives and similar repositories for AIList
Users that are interested in AIList are comparing it to the libraries listed below
Sorting:
- Implicit Interval Tree with Interpolation Index☆42Updated 3 years ago
- C implementation of the Landau-Vishkin algorithm☆35Updated 3 years ago
- Self-contained, multi-threaded fasta/q parser☆48Updated last week
- Fast and flexible tool for reading, modifying and writing biological sequences☆17Updated 3 months ago
- Python language bindings for bwa☆12Updated 2 months ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated last year
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 3 years ago
- Rust wrapper for the next generation (still currently in C++)☆30Updated last week
- Fast interval intersection library☆44Updated 5 months ago
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆31Updated 5 years ago
- gia: Genomic Interval Arithmetic☆66Updated last year
- A python toolkit for building and querying multi-string BWTs☆27Updated 8 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- Optimized sequence graph implementations for graph genomics☆34Updated last week
- Haplotype phaser for next-generation sequencing data☆13Updated 4 years ago
- bedtools-like functionality for interval sets in rust☆55Updated 6 months ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 3 months ago
- Building the compacted de Bruijn graph efficiently from references or reads.☆92Updated last week
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Substring index for paths in a graph☆60Updated this week
- Benchmarking pairwise aligners☆36Updated last year
- Pairwise nucleotide alignment benchmark of Rust bindings☆30Updated 2 years ago
- Quality of life improvements for Bioinformatics in Python.☆31Updated this week
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆24Updated this week
- GFA parser in Rust☆30Updated 2 years ago
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 5 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 9 years ago
- Efficient, parallel compression for terabyte-scale data☆57Updated 4 months ago