databio / GenomicDistributions
Calculate and plot distributions of genomic ranges
☆26Updated 9 months ago
Alternatives and similar repositories for GenomicDistributions:
Users that are interested in GenomicDistributions are comparing it to the libraries listed below
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 6 months ago
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Updated 2 years ago
- Bedfile perturbation tool☆17Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆24Updated 11 months ago
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆13Updated this week
- Snakemake pipeline for running MAJIQ☆19Updated last year
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- iread☆23Updated 3 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆34Updated 7 months ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 5 months ago
- a set of NGS pipelines☆24Updated 2 weeks ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Builds a PEP from SRA or GEO accessions☆46Updated 5 months ago
- Sashimi plots for RNA-seq data using detected transcripts☆27Updated last month
- Chromatin segmentation in R☆19Updated 7 years ago
- ☆9Updated 4 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- interactive plots for differential expression analysis☆29Updated last week
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated last year
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- Nascent Transcription Processing Pipeline☆18Updated 2 weeks ago
- Isoform-level functional RNA-Seq analysis 🧬☆22Updated 2 months ago
- ☆27Updated 2 months ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- simplified cellranger for long-read data☆18Updated 4 months ago
- Codes and Data for FFPEsig manuscript☆15Updated last year