databio / GenomicDistributions
Calculate and plot distributions of genomic ranges
☆25Updated 6 months ago
Related projects ⓘ
Alternatives and complementary repositories for GenomicDistributions
- Builds a PEP from SRA or GEO accessions☆46Updated last month
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆13Updated this week
- Interactive R package to quantify, analyse and visualise alternative splicing☆35Updated this week
- iread☆23Updated 3 years ago
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Updated 2 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 3 months ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- interactive plots for differential expression analysis☆25Updated 2 months ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆24Updated 8 months ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Chromatin segmentation in R☆19Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆41Updated 2 years ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- Differential ATAC-seq toolkit☆27Updated 10 months ago
- Bedfile perturbation tool☆16Updated 11 months ago
- R package for Methylation-based Inference of Regulatory Activity☆11Updated 4 years ago
- a set of NGS pipelines☆24Updated this week
- R Interface to the NCBI SRA metadata☆23Updated 5 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆34Updated 4 months ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 2 months ago
- fast webservices based query tool for large sets of genomic features☆25Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆25Updated 2 months ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆17Updated 2 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 3 years ago
- BigWig manpulation tools using libBigWig and htslib☆28Updated 3 months ago
- R package wrapping bedtools☆37Updated 2 months ago
- Differential expression and allelic analysis, nonparametric statistics☆27Updated last year
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- mitochondrial variant analysis tools☆13Updated 3 years ago