nsheff / LOLA
Locus Overlap Analysis: Enrichment of Genomic Ranges
☆76Updated 4 years ago
Alternatives and similar repositories for LOLA
Users that are interested in LOLA are comparing it to the libraries listed below
Sorting:
- Analysing Capture Seq Count Data☆14Updated 6 years ago
- A preprocessing and QC pipeline for HiChIP data☆38Updated 2 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays☆30Updated last year
- R package for genomic feature analysis and visualization☆77Updated 3 weeks ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated this week
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- Filtering of PDX samples for mouse derived reads☆27Updated 2 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆87Updated 2 months ago
- Identify and correct invalid gene symbols☆58Updated 5 months ago
- A modular, containerized pipeline for ATAC-seq data processing☆57Updated last month
- An R for fast and flexible DNA methylation analysis☆32Updated 9 months ago
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- Tutorials covering various topics in genomic data analysis.☆17Updated 6 years ago
- RNA-seq Quantification of Alternative Polyadenylation☆46Updated last year
- Differential Count Data Analysis Toolbox☆61Updated last year
- A toolkit for working with ATAC-seq data.☆24Updated 11 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- Lightweight Iterative Gene set Enrichment in R☆56Updated 7 months ago
- Identify cell types and pathways affected by genetic risk loci.☆37Updated last year
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- ☆62Updated last month
- How to use CENTIPEDE to determine if a transcription factor is bound.☆26Updated 7 years ago
- Enhancer Linking by Methylation/Expression Relationship (ELMER) is package to identify tumor-specific changes in DNA methylation within d…☆25Updated last year
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago