Locus Overlap Analysis: Enrichment of Genomic Ranges
☆82Sep 1, 2020Updated 6 years ago
Alternatives and similar repositories for LOLA
Users that are interested in LOLA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Project metadata manager for biological sample metadata in Python☆41Oct 1, 2026Updated last month
- Wrappers around NGS peak callers to both call peaks and run IDR☆11Aug 2, 2013Updated 13 years ago
- An interactive Shiny web application for genomic interval enrichment analysis using LOLA.☆16Apr 17, 2022Updated 4 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆36Oct 7, 2026Updated 3 weeks ago
- Python toolkit for building restartable pipelines☆46Oct 16, 2026Updated 2 weeks ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Romulus: Robust multi-state identification of transcription factor binding sites from DNase-seq data☆10Mar 6, 2019Updated 7 years ago
- Interval data structure☆235Mar 18, 2026Updated 7 months ago
- Differential methylation: Easy, Fast, Identification and ANnoTation☆19Dec 18, 2020Updated 5 years ago
- R package for Methylation-based Inference of Regulatory Activity☆13Apr 9, 2020Updated 6 years ago
- Collections of transcription factor binding motifs for the software suite Regulatory Sequence Analysis Tools (RSAT)☆11May 16, 2026Updated 5 months ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Jan 19, 2021Updated 5 years ago
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆22Sep 17, 2026Updated last month
- Applying IDR analysis to Homer peaks.☆20May 8, 2020Updated 6 years ago
- Calculate and plot distributions of genomic ranges☆27Apr 23, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- chromatin Variability Across Regions (of the genome!)☆198May 1, 2026Updated 6 months ago
- Scripts for analyzing ATAC-STARR data.☆10Feb 5, 2024Updated 2 years ago
- R package with motifs for use with chromVAR☆29Nov 17, 2017Updated 8 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆26Dec 11, 2017Updated 8 years ago
- MUltiScale enrIchment Calling for ChIP-Seq Datasets☆23Mar 14, 2019Updated 7 years ago
- ChIP-seq/RNA-seq analysis software suite for gene expression heatmaps☆23Oct 12, 2017Updated 9 years ago
- A tool for Read Multi-Mapper Resolution☆25Feb 15, 2017Updated 9 years ago
- R package to quickly obtain count vectors from indexed bam files☆15May 21, 2026Updated 5 months ago
- Ritornello is a high fidelity control free ChIP-seq peak calling algorithm☆13Aug 23, 2018Updated 8 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- R package for genomic feature analysis and visualization☆83Apr 15, 2025Updated last year
- HiC-Reg is a tool to predict Hi-C contact counts from one-dimensional regulatory signals☆11Aug 25, 2020Updated 6 years ago
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆112Dec 16, 2022Updated 3 years ago
- The deconvR is an R package designed for analyzing deconvolution of the bulk sample(s) using an atlas of reference omic signature profile…☆11Jul 22, 2026Updated 3 months ago
- Single Cell multimodal data scripts for downloading datasets☆20May 20, 2026Updated 5 months ago
- Peakzilla is a self-learning algorithm to identify transcription factor binding sites from ChIP-seq data. I would be very happy if you tr…☆21Aug 18, 2025Updated last year
- IDR☆179Sep 18, 2018Updated 8 years ago
- Rapid Mapping-based Isoform Quantification from RNA-Seq Reads☆127Jun 9, 2022Updated 4 years ago
- Inferring admixture proportions from NGS data☆13Oct 15, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Jul 6, 2021Updated 5 years ago
- An R/Bioconfuctor package for association analysis of genomic regions based on permutation tests☆16Updated this week
- Galaxy Docker Image for the HiCExplorer☆11Mar 3, 2019Updated 7 years ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆123Jan 15, 2023Updated 3 years ago
- Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches☆45Mar 31, 2026Updated 7 months ago
- Manager for multi-container computing environments☆25Mar 6, 2026Updated 7 months ago
- Cloud-based single-cell copy-number variation analysis tool☆52Mar 21, 2023Updated 3 years ago