nsheff / LOLALinks
Locus Overlap Analysis: Enrichment of Genomic Ranges
☆78Updated 5 years ago
Alternatives and similar repositories for LOLA
Users that are interested in LOLA are comparing it to the libraries listed below
Sorting:
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Differential Count Data Analysis Toolbox☆61Updated last year
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Updated 6 years ago
- Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)☆28Updated 10 years ago
- Transcript quantification import with automatic metadata detection☆67Updated this week
- Lightweight Iterative Gene set Enrichment in R☆57Updated 11 months ago
- A small R package to make sequencing read coverage plots in R.☆39Updated 3 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated this week
- R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing☆61Updated 4 months ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- An R interface to the MEME Suite☆52Updated 3 months ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- A toolkit for working with ATAC-seq data.☆24Updated last year
- R package for genomic feature analysis and visualization☆79Updated 5 months ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.☆70Updated 4 years ago
- An R for fast and flexible DNA methylation analysis☆33Updated 2 months ago
- Glimma R package☆50Updated last year
- GREAT Analysis - Functional Enrichment on Genomic Regions☆90Updated 6 months ago
- Tools for visualizing genomics data☆69Updated 3 years ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- Normalization for single cell RNA-seq data☆48Updated 3 months ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem