brentp / quicksectLinks
a cythonized, extended version of the interval search tree in bx
☆30Updated 6 years ago
Alternatives and similar repositories for quicksect
Users that are interested in quicksect are comparing it to the libraries listed below
Sorting:
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated last year
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Updated 8 years ago
- provides common tools and lookup tables used primarily by the hgvs and uta packages☆23Updated 3 months ago
- WDL plugin for pytest☆48Updated 2 years ago
- non-redundant, compressed, journalled, file-based storage for biological sequences☆47Updated last month
- robust matching of small variant datasets using flexible scoring schemes☆11Updated 5 years ago
- Efficient handling of FASTQ files from Python☆51Updated 2 weeks ago
- ☆22Updated 2 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated last month
- A Perl extension and collection of utilities for Next-Generation Sequencing (NGS) data analysis☆23Updated last month
- Manuscript describing ChronQC is now available online in Bioinformatics☆18Updated 6 years ago
- A Python package for fast operations on 1-dimensional genomic signal tracks☆23Updated 5 years ago
- Bioinformatics Open Source Sequence machine☆32Updated 2 years ago
- sfasta☆35Updated 7 months ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- pythonic wrapper for htslib☆24Updated 8 years ago
- Demonstrating best practices for bioinformatics command line tools☆26Updated 5 years ago
- Modular job submitter for arbitrary pipelines or commands.☆24Updated last month
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Updated 2 years ago
- Monitor computational workflows in real time☆74Updated last year
- A lightweight Python graphing API for genomic features☆15Updated 3 years ago
- python wrapper to dpryan79's bigwig library using cffi☆19Updated 9 years ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- a string to graph aligner☆41Updated 9 years ago
- Quality of life improvements for Bioinformatics in Python.☆31Updated last week
- Toil workflows for common genomic pipelines☆33Updated 6 years ago
- ☆36Updated 5 years ago
- Python bindings to bwa mem☆32Updated 5 years ago
- Stupid Simple Structural Variant View☆25Updated 9 years ago
- create a gemini-compatible database from a VCF☆55Updated 4 years ago