brentp / quicksectLinks
a cythonized, extended version of the interval search tree in bx
☆30Updated 6 years ago
Alternatives and similar repositories for quicksect
Users that are interested in quicksect are comparing it to the libraries listed below
Sorting:
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 11 months ago
- provides common tools and lookup tables used primarily by the hgvs and uta packages☆23Updated 2 months ago
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Updated 8 years ago
- Parse Illumina sample sheets with Python☆50Updated last year
- Modular job submitter for arbitrary pipelines or commands.☆24Updated 2 weeks ago
- python wrapper to dpryan79's bigwig library using cffi☆19Updated 9 years ago
- WDL plugin for pytest☆48Updated 2 years ago
- Monitor computational workflows in real time☆73Updated last year
- Retrieve data in genomic intervals with a Python interface for tabix.☆82Updated 8 years ago
- Numerical Encoding for Human Genetic Variants☆42Updated 2 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- horizontal pileup☆16Updated 3 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated 11 months ago
- Toil workflows for common genomic pipelines☆33Updated 6 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 2 weeks ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆43Updated 4 years ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Stupid Simple Structural Variant View☆25Updated 9 years ago
- Python bindings to bwa mem☆32Updated 5 years ago
- A Perl extension and collection of utilities for Next-Generation Sequencing (NGS) data analysis☆23Updated 3 weeks ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Updated 7 years ago
- Malleable All-seeing Journal Of Research Artifacts☆35Updated 2 years ago
- a minimal, scriptable genome browser for python☆52Updated 11 months ago
- sfasta☆35Updated 6 months ago
- pythonic wrapper for htslib☆24Updated 8 years ago
- Tandem Repeat Annotation Library☆25Updated 2 years ago
- A wrapper to Heng Li's kseq/readfq, an efficient FastQ/Fasta parser☆15Updated 2 years ago
- Efficient handling of FASTQ files from Python☆51Updated 3 months ago
- Bioinformatics Open Source Sequence machine☆32Updated 2 years ago