pepkit / peppy
Project metadata manager for PEPs in Python
☆37Updated 6 months ago
Alternatives and similar repositories for peppy:
Users that are interested in peppy are comparing it to the libraries listed below
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Updated 7 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 8 months ago
- bedtools-like functionality for interval sets in rust☆51Updated 7 months ago
- Fast FASTQ sample demultiplexing in Rust.☆61Updated 3 weeks ago
- (WIP) best-practices workflow for rare disease☆60Updated 9 months ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 3 years ago
- Reference genome resource manager☆75Updated last year
- Simple pure Python SAM parser and objects for working with SAM records☆64Updated 2 years ago
- Quality of life improvements for Bioinformatics in Python.☆28Updated this week
- python wrapper to dpryan79's bigwig library using cffi☆19Updated 8 years ago
- Container class to represent genomic locations and support genomic analysis☆20Updated this week
- A python package and a set of shell commands to handle GTF files☆47Updated 9 months ago
- Fast sequencing data quality metrics☆26Updated 2 weeks ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆59Updated last week
- Efficiently read and write sequencing data from Python☆62Updated this week
- A Python library to visualize and analyze long-read transcriptomes☆60Updated last year
- An automated RNA-seq pipeline using Nextflow☆37Updated 6 months ago
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- Builds a PEP from SRA or GEO accessions☆49Updated 6 months ago
- Experimental features for Nextflow☆42Updated 3 weeks ago
- GitHub Action to launch a workflow using Nextflow Tower.☆12Updated 2 years ago
- Manuscript describing ChronQC is now available online in Bioinformatics☆18Updated 5 years ago
- An interactive learning resource for next-generation sequencing (NGS) techniques☆28Updated 6 years ago
- ☆22Updated last year
- SQL support plugin for Nextflow☆26Updated 2 months ago
- A job submitter for Portable Encapsulated Projects☆22Updated last month
- An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.☆4Updated last year
- Paired Genomic Loci Tool Suite☆30Updated 2 years ago
- Enriched Domain Detector for ChIP-seq data☆16Updated 2 years ago