pepkit / peppyLinks
Project metadata manager for PEPs in Python
☆37Updated 10 months ago
Alternatives and similar repositories for peppy
Users that are interested in peppy are comparing it to the libraries listed below
Sorting:
- Reference genome resource manager☆75Updated last year
- Monitor computational workflows in real time☆74Updated last year
- A job submitter for Portable Encapsulated Projects☆22Updated 5 months ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆52Updated 7 years ago
- Simple pure Python SAM parser and objects for working with SAM records☆64Updated 3 years ago
- Builds a PEP from SRA or GEO accessions☆52Updated 3 weeks ago
- Fast FASTQ sample demultiplexing in Rust.☆63Updated 2 months ago
- Container class to represent genomic locations and support genomic analysis☆22Updated last week
- python wrapper to dpryan79's bigwig library using cffi☆19Updated 9 years ago
- bedtools-like functionality for interval sets in rust☆52Updated this week
- A web based tool to manage and automate the processing of publicly available datasets.☆40Updated 4 years ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆46Updated 4 months ago
- High-throughput gene to knowledge mapping through massive integration of public sequencing data.☆31Updated 6 years ago
- conda recipes for genomic data☆85Updated 4 years ago
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆43Updated last year
- An automated RNA-seq pipeline using Nextflow☆37Updated 10 months ago
- a minimal, scriptable genome browser for python☆51Updated 7 months ago
- A Rust library and command line tool for working with genomic ranges and their data.☆101Updated last year
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 7 months ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- create, manage, and upload track hubs for use in the UCSC genome browser☆54Updated last year
- PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using …☆30Updated last month
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- A C library for handling bigWig files☆80Updated 6 months ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- ☆30Updated 3 months ago
- Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)☆30Updated 3 weeks ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Updated 3 years ago