Annotating epigenetic variation among samples with region sets in R
☆11Jan 18, 2025Updated last year
Alternatives and similar repositories for COCOA
Users that are interested in COCOA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package for Methylation-based Inference of Regulatory Activity☆13Apr 9, 2020Updated 6 years ago
- Augmented interval list (AIList): a novel data structure for efficient genomic interval search☆23Aug 29, 2022Updated 4 years ago
- Simplified R caching for reproducible big data projects☆35Feb 28, 2026Updated 8 months ago
- Manager for multi-container computing environments☆25Mar 6, 2026Updated 7 months ago
- Author academic documents in markdown☆13Apr 20, 2026Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Calculate and plot distributions of genomic ranges☆27Apr 23, 2025Updated last year
- A modular, containerized pipeline for PRO-seq data processing☆13Mar 6, 2026Updated 7 months ago
- A high-performance search engine for large-scale genomic interval datasets☆20Sep 1, 2021Updated 5 years ago
- Serves a web interface and RESTful API for reference genome assets.☆12Apr 11, 2026Updated 6 months ago
- Bedfile perturbation tool☆17Mar 6, 2026Updated 7 months ago
- An interactive Shiny web application for genomic interval enrichment analysis using LOLA.☆16Apr 17, 2022Updated 4 years ago
- Modular job submitter for arbitrary pipelines or commands.☆25Oct 22, 2026Updated last week
- integrative pathway analysis with modern PCA methodology and gene selection☆11Jun 29, 2023Updated 3 years ago
- Collection of R functions used in the Hochwagen Lab☆12Aug 4, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Marker gene profile estimation method used in NeuroExpresso manuscript☆14Jul 11, 2019Updated 7 years ago
- Observe Multiple Reactive Elements using tidyselect-like verbs☆12Aug 27, 2019Updated 7 years ago
- A flexible framework for nucleosome profiling of cell-free DNA☆10May 12, 2025Updated last year
- Links to ATAC-seq analysis tools☆78Updated this week
- Builds a PEP from SRA or GEO accessions☆55Oct 2, 2026Updated 3 weeks ago
- Learner personas for R training☆12Jan 28, 2021Updated 5 years ago
- Python 3 tools for data mining in molecular biology☆13Sep 14, 2015Updated 11 years ago
- Creating virtual environments for R.☆17Oct 24, 2019Updated 7 years ago
- Antibiotic resistance genes (ARGs) have accelerated microbial threats to human health during the last decade. Here we determined the risk…☆20Apr 8, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Bayesian Multiple Index Models for Environmental Mixtures☆11Jul 2, 2021Updated 5 years ago
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Aug 19, 2020Updated 6 years ago
- MASI Lab Implementation of PheWAS in Python☆28Nov 12, 2024Updated last year
- Python toolkit for building restartable pipelines☆46Oct 16, 2026Updated 2 weeks ago
- ☆17Feb 27, 2021Updated 5 years ago
- ☆17Jul 13, 2024Updated 2 years ago
- Growth curve analysis☆16Jul 26, 2025Updated last year
- Packaged HTML dependencies for Shiny, R Markdown, flexdashboard, htmlwidgets, and leaflet☆16Jul 18, 2018Updated 8 years ago
- Code base for profiling highly replicated differential gene expression RNA-seq.☆11Dec 13, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Reference genome resource manager☆74Oct 6, 2026Updated 3 weeks ago
- Comparison, benchmarking & QC of epigenetic datasets☆19May 11, 2026Updated 5 months ago
- Onboarding materials for the Greene Lab☆33May 12, 2026Updated 5 months ago
- OTTR for making courses! This is a template repo that helps people write 1 course but publish it in three places. Rendered example: https…☆17Apr 1, 2025Updated last year
- Tutorials for the InterMine Python web client☆14Jun 1, 2022Updated 4 years ago
- R package to create datasets with various known effects to be rediscovered, for teaching purposes.☆23Oct 6, 2026Updated 3 weeks ago
- CWL experimental grammar☆11Nov 16, 2025Updated 11 months ago