databio / COCOALinks
Annotating epigenetic variation among samples with region sets in R
☆11Updated 7 months ago
Alternatives and similar repositories for COCOA
Users that are interested in COCOA are comparing it to the libraries listed below
Sorting:
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- A set of tools for accurate quantitation of single-cell allele-specific expression☆12Updated 2 years ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 4 years ago
- scRNA-seq data visualization from scrattch☆27Updated 2 weeks ago
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆29Updated 2 years ago
- R package for plotting 3D graphical visualization of multi-omics data.☆22Updated 3 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated this week
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Updated 8 years ago
- GEO RNA-seq Experiments Processing Pipeline☆21Updated 5 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆32Updated 4 years ago
- Assessing the increase in power from increasing read depth in a given RNA-Seq study☆13Updated 6 years ago
- Evolutionary frequency visualization tool of temporal data☆23Updated 3 years ago
- Toolbox package for organizing and working with TCGA data☆28Updated last month
- Calculate and plot distributions of genomic ranges☆26Updated 4 months ago
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Updated 3 years ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆20Updated 4 months ago
- Explore the cancer relevance of your gene list☆51Updated 6 months ago
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆27Updated 5 months ago
- ☆17Updated last year
- countsimQC - Compare characteristic features of count data sets☆28Updated last month
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆30Updated 4 months ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆14Updated 4 years ago
- GWAS gold standards repository☆38Updated last year
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Single Cell multimodal data scripts for downloading datasets☆17Updated 2 months ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆25Updated last year
- Toolkit for QTL mapping and meta-analysis.☆17Updated 3 years ago
- An open, collaborative project to analyze data from the Single-cell Pediatric Cancer Atlas (ScPCA) Portal☆15Updated this week