databio / COCOALinks
Annotating epigenetic variation among samples with region sets in R
☆11Updated 9 months ago
Alternatives and similar repositories for COCOA
Users that are interested in COCOA are comparing it to the libraries listed below
Sorting:
- Repository for signature genes from Immune Cell Atlas☆18Updated 6 years ago
- Toolbox package for organizing and working with TCGA data☆28Updated 3 months ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment☆33Updated 2 months ago
- Accessing AlphaMissense Data Resources in R☆11Updated last week
- Assessing the increase in power from increasing read depth in a given RNA-Seq study☆13Updated 6 years ago
- Explore the cancer relevance of your gene list☆52Updated last month
- Quick access to gene synonyms☆29Updated last week
- Calculate and plot distributions of genomic ranges☆26Updated 5 months ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆43Updated 2 months ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated last week
- An R Package for Geneset Enrichment Workflows☆76Updated last month
- scRNA-seq data visualization from scrattch☆27Updated 2 months ago
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Updated 3 years ago
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆29Updated 2 years ago
- GEO RNA-seq Experiments Processing Pipeline☆21Updated 5 years ago
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆27Updated 6 months ago
- Evolutionary frequency visualization tool of temporal data☆23Updated 3 years ago
- Create QC and summary reports for Alevin output☆31Updated 3 months ago
- R package for detecting differential distributions using a statistical test based on the wasserstein distance☆27Updated 2 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- iDEP: integrated Differential Expression & Pathway analysis☆14Updated 6 years ago
- Transcript quantification import with automatic metadata detection☆67Updated last week
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Updated 2 years ago
- Single sample network reconstruction in R☆23Updated 5 years ago
- R package for plotting 3D graphical visualization of multi-omics data.☆23Updated 3 years ago
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆30Updated 5 months ago
- countsimQC - Compare characteristic features of count data sets☆29Updated 3 months ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 11 years ago
- An R package for analyzing high-dimensional cytometry data using the tidyverse.☆19Updated last year