Workflow for MAG quality assessment and taxonomical annotation.
☆15May 26, 2026Updated 5 months ago
Alternatives and similar repositories for MAGFlow
Users that are interested in MAGFlow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Board InteGrating Metagenome-Assembled Genomes☆10Dec 16, 2025Updated 10 months ago
- From dereplication to genome enrichment: Enhancing genome recovery across metagenomic samples using MAGmax☆37Aug 28, 2026Updated 2 months ago
- A nf-core pipeline for untargeted whole genome reconstruction with iSNV detection from metagenomic samples.☆42Oct 8, 2026Updated 3 weeks ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆56Sep 1, 2026Updated last month
- Lineage-aware Kraken2 refinement for long-read metagenomics☆17Oct 2, 2026Updated 3 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆97May 11, 2026Updated 5 months ago
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.☆57Sep 28, 2026Updated last month
- gemsparcl 💎✨ Rapid and consistent clustering of millions of genomes highlights the diversity of prokaryotic life☆19Jun 16, 2026Updated 4 months ago
- Parallelised and automated construction of metagenomic classifier databases of different tools☆22Updated this week
- This repository releases the model weights of ANNA16, an end-to-end tool that predicts 16S rRNA gene copy number (GCN) from 16S rRNA sequ…☆12Oct 17, 2026Updated last week
- An algorithm for clustering metagenomic sequences.☆43Aug 5, 2026Updated 2 months ago
- Proof-of-concept Nextflow pipeline to interact with OpenAI Whisper☆11Jun 17, 2025Updated last year
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆31Jan 15, 2026Updated 9 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆66Sep 1, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Recovery of eukaryotic genomes using contrastive learning. A specialized metagenomic binning tool designed for recovering high-quality eu…☆26Oct 20, 2026Updated last week
- ☆23Jan 6, 2026Updated 9 months ago
- Taxonomy manipulation for sylph (new version)☆12Sep 18, 2026Updated last month
- Best-practice analysis pipeline for mapping reads to a (large) collections of genomes☆13Updated this week
- Modeling strain-level variation by gene, phylogeny, or pathway☆14Aug 6, 2026Updated 2 months ago
- ☆31Aug 2, 2026Updated 2 months ago
- ☆67Oct 12, 2026Updated 2 weeks ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆26Jul 22, 2024Updated 2 years ago
- More scalable dereplication for metagenome assembled genomes☆91Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Sep 24, 2024Updated 2 years ago
- Leviathan: Fast, memory-efficient, and scalable taxonomic and pathway profiling for (pan)genome-resolved metagenomics and metatranscripto…☆30Updated this week
- Command-line tool for visualizing batches of prokaryotic genomes☆11Jul 12, 2025Updated last year
- Query sequence database by HMMs arranged in predefined synteny structure☆21Jun 23, 2026Updated 4 months ago
- Assessing and Improving the quality of metagenomic assemblies☆32Feb 21, 2022Updated 4 years ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆79Oct 12, 2026Updated 2 weeks ago
- ☆27Jun 20, 2023Updated 3 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆39Feb 26, 2023Updated 3 years ago
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- The binning tool with dynamic contrastive learning and deep language model☆26Oct 21, 2026Updated last week
- From annotated genomes to metabolic screening in large scale microbiotas☆77Oct 16, 2026Updated 2 weeks ago
- A comprehensive prokaryotic genome annotation pipeline☆92Oct 12, 2026Updated 2 weeks ago
- (Meta-)genome screening for functional and natural product gene sequences☆119Updated this week
- R package for distilling functional annotations of bacterial genomes and metagenomes☆12Feb 27, 2025Updated last year
- Bacterial typing pipeline for clinical NGS data. Written in NextFlow, Python & Bash.☆17Oct 22, 2026Updated last week
- ☆11Jan 20, 2022Updated 4 years ago