Alternatives and similar repositories for alphafold3

Users that are interested in alphafold3 are comparing it to the libraries listed below

• psipred / Merizo
  Fast and accurate protein domain segmentation using Invariant Point Attention
  ☆40Updated 2 months ago
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆41Updated last week
• KULL-Centre / _2024_cagiada_stability
  ☆70Updated 4 months ago
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆63Updated 8 months ago
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆51Updated this week
• drhicks / Kejia_peptide_binders
  code for IDR binding paper 2025
  ☆39Updated 5 months ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆51Updated 2 months ago
• ievapudz / TemStaPro
  TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.
  ☆59Updated last year
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆63Updated 3 weeks ago
• bwicky / oligomer_hallucination
  ☆36Updated last year
• DunbrackLab / IPSAE
  Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3
  ☆65Updated 4 months ago
• data2code / afpdb
  Efficient manipulation of protein structures in Python
  ☆55Updated 9 months ago
• silicogenesis / protkit
  A Unified Approach to Protein Engineering
  ☆42Updated last year
• AbSciBio / igdesign
  ☆43Updated 6 months ago
• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆68Updated 11 months ago
• KosinskiLab / alphafold3x
  Explicit crosslinks in AlphaFold 3
  ☆22Updated 4 months ago
• Kuhlman-Lab / evopro
  ☆85Updated last week
• labstructbioinf / localpdb
  Python package to manage protein structures and their annotations
  ☆43Updated last year
• bene837 / af2seq
  ☆44Updated 10 months ago
• Rocklin-Lab / cdna-display-proteolysis-pipeline
  ☆25Updated 2 years ago
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆62Updated last month
• dina-lab3D / CombFold
  ☆85Updated 10 months ago
• beckham-lab / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆44Updated 3 months ago
• Andre-lab / evodock
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
  ☆29Updated last month
• psipred / ted-tools
  ML toolset for creating TED: The Encyclopedia of Domains
  ☆21Updated 2 months ago
• brianjimenez / pydock_tutorial
  PyDock Tutorial
  ☆32Updated 7 years ago
• luo-group / MODIFY
  ML-optimized library design with improved fitness and diversity for protein engineering
  ☆35Updated last year
• clami66 / AF_unmasked
  Source code and examples for AlphaFold Unmasked
  ☆73Updated 2 months ago
• ibmm-unibe-ch / TemBERTure
  ☆29Updated 11 months ago
• Graylab / AlphaRED
  AlphaFold-initiated replica exchange protein docking
  ☆83Updated 2 months ago