wells-wood-research / timed-design
Protein Sequence Design with Deep Learning and Tooling like Monte Carlo Sampling and Analysis
☆56Updated 6 months ago
Alternatives and similar repositories for timed-design
Users that are interested in timed-design are comparing it to the libraries listed below
Sorting:
- Source code and examples for AlphaFold Unmasked☆63Updated last month
- ☆66Updated last month
- Structure prediction of alternative protein conformations☆75Updated 2 months ago
- ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…☆54Updated 2 months ago
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆94Updated 9 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆47Updated 5 months ago
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆42Updated 5 months ago
- Code for holographic machine learning of proteins☆23Updated 6 months ago
- Modelling of Large Protein Complexes☆37Updated last year
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆69Updated 4 months ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆57Updated 3 months ago
- AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer☆56Updated 3 weeks ago
- ☆103Updated 2 years ago
- Efficient manipulation of protein structures in Python☆53Updated 6 months ago
- The software system of improving AlphaFold2- and AlphaFold-Multimer-based protein tertiary & quaternary structure prediction. It was deve…☆28Updated last year
- ☆65Updated 3 months ago
- ☆47Updated 6 months ago
- Parametric Building of de novo Functional Topologies☆44Updated 3 years ago
- DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.☆43Updated 2 months ago
- Plugin for folding sequences directly in PyMOL☆27Updated 5 months ago
- ☆21Updated 6 months ago
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆34Updated 4 years ago
- ☆82Updated 7 months ago
- Ultra-fast in-silico structure mutation☆33Updated last month
- ☆38Updated 4 months ago
- Scripts to run AlphaFold3, Boltz-1 and Chai-1 with MMseqs2 MSAs and custom templates.☆70Updated this week
- This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…☆11Updated 9 months ago
- Python package to manage protein structures and their annotations☆42Updated last year
- ☆43Updated 8 months ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆66Updated 8 months ago