sritchie73 / NetRep
R package containing functions for assessing the replication/preservation of network topology for weighted gene coexpression network modules in one or more independent datasets through permutation testing.
☆11Updated last year
Related projects ⓘ
Alternatives and complementary repositories for NetRep
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 5 years ago
- Compilation of R heatmap functions.☆14Updated 3 years ago
- Glimma R package☆50Updated 2 months ago
- Summer school course materials collection☆25Updated 6 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆36Updated this week
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 6 years ago
- How to use CENTIPEDE to determine if a transcription factor is bound.☆25Updated 6 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆34Updated last year
- ☆28Updated 4 months ago
- Companion repo for ExAC paper, 2015☆33Updated 8 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- PARE: a computational method to Predict Active Regulatory Elements☆10Updated 5 years ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Updated 8 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆39Updated 7 years ago
- Transcript quantification import with automatic metadata detection☆67Updated last month
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆25Updated 8 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆39Updated 3 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆41Updated 2 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- R package wrapping bedtools☆37Updated 2 months ago
- Make rapid visualizations of RNA-seq data in R☆18Updated 5 years ago
- Independent Hypothesis Weighting☆15Updated last year
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago
- Get SNP proxies from the 1000 Genomes Project.☆28Updated 6 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆29Updated 6 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆31Updated 3 years ago