zheminzhou / EToKiView external linksLinks
all methods related to Enterobase
☆44Sep 4, 2024Updated last year
Alternatives and similar repositories for EToKi
Users that are interested in EToKi are comparing it to the libraries listed below
Sorting:
- In silico serotyping, finetyping and Bexsero antigen sequence typing of Neisseria meningitidis☆14Feb 2, 2025Updated last year
- ☆37Apr 14, 2022Updated 3 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Jul 17, 2020Updated 5 years ago
- ☆58Feb 10, 2026Updated last week
- ☆16Jun 21, 2023Updated 2 years ago
- The MLST pipeline developed by the PathOGiST research group☆36Nov 29, 2023Updated 2 years ago
- GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata. Click…☆86Dec 15, 2024Updated last year
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆28Jul 18, 2025Updated 6 months ago
- BSR-Based Allele Calling Algorithm☆148Feb 2, 2026Updated 2 weeks ago
- ASMNGS20 - 2020 Conference Details☆15Jun 10, 2022Updated 3 years ago
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13Dec 24, 2025Updated last month
- ♥ Efficient Estimation of Evolutionary Distances☆47Jan 20, 2026Updated 3 weeks ago
- ☆26Aug 2, 2023Updated 2 years ago
- Ultrafast sequence typing and gene detection from NGS raw reads☆20Apr 15, 2021Updated 4 years ago
- Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.☆32Nov 19, 2025Updated 2 months ago
- In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data☆22May 8, 2024Updated last year
- A simple nextflow pipeline for running kraken2 and bracken in a docker container☆20Oct 8, 2025Updated 4 months ago
- ASMNGS18 - 2018 Conference Details☆12Oct 3, 2018Updated 7 years ago
- Bacterial Isolate Genome Sequence Database (BIGSdb): A platform for gene-by-gene bacterial population annotation and analysis.☆75Updated this week
- ☆23Updated this week
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Apr 16, 2024Updated last year
- Plasmid exploration of bacterial genomes☆23Mar 2, 2022Updated 3 years ago
- Finding prophage regions in bacterial genomes using brute force☆22Jan 20, 2023Updated 3 years ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆13Aug 26, 2024Updated last year
- Archived - please see updated sccmec tool at link below☆13Aug 30, 2024Updated last year
- Scan contig files against PubMLST typing schemes☆266Jan 2, 2026Updated last month
- "Reads to report" for public health and clinical microbiology☆143Dec 9, 2025Updated 2 months ago
- ☆135Updated this week
- Intra-species bacterial contamination detection☆25Feb 5, 2026Updated last week
- A taxonomic classifier of plasmids☆28Jul 7, 2021Updated 4 years ago
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated last year
- Hierarchical clustering of cgMLST☆13Nov 20, 2023Updated 2 years ago
- Extracts contigs harbouring a target gene / sequence from assemblies and aligns the contigs around the target sequence☆13May 15, 2018Updated 7 years ago
- Benchmark datasets for WGS analysis☆39Aug 4, 2019Updated 6 years ago
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆32Apr 24, 2025Updated 9 months ago
- CoV-Seq: COVID-19 Genomic Sequence Database and Visualization☆15Oct 1, 2020Updated 5 years ago
- ☆14Jun 30, 2021Updated 4 years ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆26Jul 13, 2023Updated 2 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Aug 8, 2022Updated 3 years ago