zheminzhou / EToKiLinks
all methods related to Enterobase
☆43Updated last year
Alternatives and similar repositories for EToKi
Users that are interested in EToKi are comparing it to the libraries listed below
Sorting:
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- A tool for removing redundant genomes from a set of assemblies☆77Updated 2 weeks ago
- Split Kmer Analysis☆65Updated 3 years ago
- Identify phage regions in bacterial genomes for masking purposes☆34Updated 6 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- a collection of scripts for organising bacterial genomes by species☆77Updated 3 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆61Updated 7 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆41Updated 4 years ago
- ☆37Updated 3 years ago
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆31Updated 5 months ago
- SeqSero2☆38Updated last year
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated last month
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆49Updated 3 weeks ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆75Updated 3 months ago
- Estimate metagenomic coverage and sequence diversity☆54Updated last year
- whole genome MLST analysis☆47Updated 3 months ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆74Updated 2 years ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆60Updated 5 months ago
- A toolkit for prokaryotic comparative genomics☆51Updated 8 months ago
- Split k-mer analysis – version 2☆92Updated 2 months ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆62Updated 3 months ago
- IslandPath standalone software☆33Updated last year
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆51Updated 2 months ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago