zheminzhou / EToKiLinks
all methods related to Enterobase
☆43Updated last year
Alternatives and similar repositories for EToKi
Users that are interested in EToKi are comparing it to the libraries listed below
Sorting:
- Identify phage regions in bacterial genomes for masking purposes☆34Updated 6 years ago
- A tool for removing redundant genomes from a set of assemblies☆76Updated 2 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Split Kmer Analysis☆65Updated 3 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- SeqSero2☆38Updated last year
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆31Updated 4 months ago
- a collection of scripts for organising bacterial genomes by species☆77Updated 3 years ago
- ☆37Updated 3 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 6 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆74Updated last year
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆42Updated 4 years ago
- tools for assessing the accuracy of genome assemblies☆34Updated last year
- Gene Absence Presence Identification tool.☆27Updated 5 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆61Updated 2 months ago
- Order and orientation of complete bacterial genomes☆28Updated last month
- Recombination-free trees☆60Updated this week
- whole genome MLST analysis☆46Updated 2 months ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆43Updated 2 years ago
- Split k-mer analysis – version 2☆91Updated last month
- A pipeline for running AMRfinderPlus and collating results into functional classes☆80Updated last year
- ☆53Updated 4 years ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆49Updated 2 months ago
- Prediction of prophages from bacterial genomes☆79Updated 2 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆75Updated 2 months ago
- reference-based long read assemblies of bacterial genomes☆50Updated 4 years ago
- Estimate metagenomic coverage and sequence diversity☆55Updated last year