Mycobacterium tuberculosis next generation sequence analysis
☆24Oct 11, 2019Updated 6 years ago
Alternatives and similar repositories for UVP
Users that are interested in UVP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumin…☆47Sep 8, 2025Updated 7 months ago
- CRyPTIC data processing pipelines☆34Jul 18, 2024Updated last year
- A pipeline for comprehensive genomic analyses of Mycobacterium tuberculosis with a focus on clinical decision making as well as research☆19Jan 8, 2026Updated 3 months ago
- ☆30Aug 28, 2025Updated 7 months ago
- Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data☆133Mar 19, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A snakemake workflow for WGS-based tuberculosis transmission analysis☆20Dec 3, 2024Updated last year
- Mycobacterium tuberculosis complex lineage typing☆10Jun 22, 2025Updated 9 months ago
- Drug Resistance Prediction with Reference Graphs☆21Oct 23, 2025Updated 5 months ago
- Antibiotic resistance prediction in minutes☆115Mar 27, 2026Updated 3 weeks ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆25Jul 13, 2023Updated 2 years ago
- de novo virus assembler of Illumina paired reads☆58May 17, 2021Updated 4 years ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆25Apr 10, 2026Updated last week
- The MLST pipeline developed by the PathOGiST research group☆37Nov 29, 2023Updated 2 years ago
- Northern Arizona SNP Pipeline☆20Oct 29, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split …☆16Aug 22, 2023Updated 2 years ago
- CNN models for antibiotic resistance prediction in M. tuberculosis genomes. From Green & Yoon et al (forthcoming)☆28Jan 19, 2023Updated 3 years ago
- Standard database for the TBProfiler tool☆30Updated this week
- An R package to produce full spectrum flow cytometry plots outside the acquisition software.☆11May 9, 2023Updated 2 years ago
- A series of perl and python scripts for generating genotypes from NGS fastq files from GTseq library sequencing.☆21Jun 14, 2022Updated 3 years ago
- This project looks at creating a controlled vocabulary for DICOM Pt 6 Data Dictionary with a focus on CS code strings.☆12Jan 9, 2026Updated 3 months ago
- A tool for investigating alternative mRNA splicing in next generation mRNA sequence data.☆12Mar 3, 2017Updated 9 years ago
- Wide and Deep Neural Net for predicting TB resistance from genotypic data☆14Dec 9, 2019Updated 6 years ago
- Code repository for machine learning and computational analysis of large-scale microbial genomics data (https://rdcu.be/9rHj)☆20May 12, 2025Updated 11 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆77Jan 6, 2021Updated 5 years ago
- Data, notebooks, and articles associated with the RSNA AI Deep Learning Lab at RSNA 2024☆13Dec 4, 2024Updated last year
- Rapid haploid variant calling and core genome alignment☆579Dec 12, 2025Updated 4 months ago
- ☆13Aug 15, 2025Updated 8 months ago
- Training material for intermediate R / Bioconductor courses☆17Mar 15, 2023Updated 3 years ago
- Repositorio de apuntes y código del curso Introducción a la bioinformática e investigación reproducible para análisis genéticos del semes…☆12Jun 1, 2017Updated 8 years ago
- A Hatch plugin to enable building a conda package from your pyproject.toml without having to write a separate conda build recipe meta.yam…☆11Apr 24, 2025Updated 11 months ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Feb 1, 2023Updated 3 years ago
- MGnify RESTful API☆10Apr 10, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- PoGo is a proteogenomic tool which allows mapping of peptides identified through mass spectrometry to a reference genome through provided…☆12Jul 8, 2021Updated 4 years ago
- Microbiome Informatics - API and service usage examples☆14Oct 7, 2021Updated 4 years ago
- The website for gen3.org☆13Updated this week
- ☆14Jun 30, 2021Updated 4 years ago
- A book for my course☆23Mar 17, 2026Updated last month
- Tool for visualising assemblies.☆17Sep 15, 2015Updated 10 years ago
- ☆10Nov 4, 2021Updated 4 years ago