CPTR-ReSeqTB / UVPLinks
Mycobacterium tuberculosis next generation sequence analysis
☆24Updated 6 years ago
Alternatives and similar repositories for UVP
Users that are interested in UVP are comparing it to the libraries listed below
Sorting:
- MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumin…☆46Updated last month
- "Reads to report" for public health and clinical microbiology☆141Updated last year
- ☆79Updated 5 years ago
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆85Updated 3 months ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆142Updated last year
- Foreign Contamination Screening caller scripts and documentation☆147Updated 7 months ago
- Making whole bacterial genome sequencing data analysis easy☆113Updated 6 months ago
- Long-read mock community experiments☆105Updated 4 years ago
- Development version of Easyfig☆100Updated last year
- snipit: summarise snps relative to your reference sequence☆162Updated last month
- Get assembly statistics from FASTA and FASTQ files☆123Updated 2 years ago
- A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), wit…☆91Updated last year
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆117Updated 2 years ago
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆136Updated 2 years ago
- OPERA-MS - Hybrid Metagenomic Assembler☆100Updated last year
- Ultra-fast preprocessing and quality control for long-read sequencing data☆191Updated last month
- FunGAP: fungal Genome Annotation Pipeline☆111Updated 4 months ago
- a signal-level demultiplexer for Oxford Nanopore reads☆126Updated 4 years ago
- A fast whole-genome aligner based on de Bruijn graphs☆153Updated 3 months ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆111Updated last month
- Metagenomic classification of long-read sequencing data☆95Updated last month
- The ARTIC fieldbioinformatics pipeline☆125Updated 2 weeks ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆58Updated last year
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆132Updated 11 months ago
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆108Updated 4 months ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆173Updated last year
- MITObim - mitochondrial baiting and iterative mapping☆114Updated 4 years ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Updated 4 years ago
- iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.☆128Updated this week
- Chromosome-level scaffolding using multiple references☆162Updated last year