GTB-tbsequencing / mutation-catalogue-2023Links
☆28Updated 4 months ago
Alternatives and similar repositories for mutation-catalogue-2023
Users that are interested in mutation-catalogue-2023 are comparing it to the libraries listed below
Sorting:
- MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumin…☆46Updated 4 months ago
- IS mapping software☆57Updated 4 years ago
- ☆84Updated 2 years ago
- Reorients assembled microbial sequences☆131Updated 5 months ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆101Updated last month
- Development version of Easyfig☆103Updated 2 years ago
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆72Updated 5 years ago
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆107Updated 2 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆57Updated 8 months ago
- Sorts amplicons from Nanopore sequencing data based on similarity☆40Updated 3 months ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆49Updated 2 years ago
- DDBJ Fast Annotation and Submission Tool☆83Updated 4 months ago
- Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.☆48Updated 9 months ago
- Standard database for the TBProfiler tool☆31Updated 5 months ago
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆42Updated 4 years ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Updated 5 years ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆148Updated 3 months ago
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 5 years ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆80Updated 2 years ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆146Updated last week
- Collection of scripts for bacterial genomics☆48Updated 6 years ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆54Updated last year
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆61Updated last year
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆78Updated 8 months ago
- Precise host read removal☆114Updated 4 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆68Updated 4 years ago
- Interactive quality assessment of genome assemblies☆117Updated last month
- Prediction of prophages from bacterial genomes☆81Updated 7 months ago
- A tool for removing redundant genomes from a set of assemblies☆78Updated 4 months ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆80Updated 2 years ago