Alternatives and similar repositories for transcluster

Users that are interested in transcluster are comparing it to the libraries listed below

• katholt / RedDog
  ☆37Updated 3 years ago
• bioinfo-ut / PlasmidSeeker
  A k-mer based program for the identification of known plasmids from whole-genome sequencing reads
  ☆36Updated 4 years ago
• rrwick / Core-SNP-filter
  a tool to filter sites in a FASTA-format whole-genome pseudo-alignment
  ☆64Updated 5 months ago
• xavierdidelot / BactDating
  Bayesian inference of ancestral dates on bacterial phylogenetic trees
  ☆93Updated 4 months ago
• gtonkinhill / panstripe
  post processing of bacterial pangenome gene presence/absence matrices
  ☆63Updated 9 months ago
• phac-nml / sistr_cmd
  SISTR (Salmonella In Silico Typing Resource) command-line tool
  ☆32Updated 7 months ago
• wanyuac / GeneMates
  An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences
  ☆27Updated 3 years ago
• simonrharris / SKA
  Split Kmer Analysis
  ☆65Updated 3 years ago
• rrwick / Assembly-Dereplicator
  A tool for removing redundant genomes from a set of assemblies
  ☆77Updated 3 months ago
• hoelzer-lab / ribap
  A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs
  ☆32Updated last week
• virus-evolution / gofasta
  ☆36Updated 8 months ago
• aldertzomer / RFPlasmid
  Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf
  ☆50Updated last year
• andrewgull / MGERT
  Mobile Genetic Elements Retrieving Tool
  ☆16Updated 6 months ago
• MicrobialDarkMatter / nanomotif
  Nanomotif - a tool for identifying methylated motifs in metagenomic samples
  ☆34Updated 2 weeks ago
• avierstr / amplicon_sorter
  Sorts amplicons from Nanopore sequencing data based on similarity
  ☆40Updated 2 months ago
• mw55309 / ideel
  Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes
  ☆54Updated 2 years ago
• LomanLab / EBAME18
  Long read metagenomics practical at EBAME18
  ☆18Updated 7 years ago
• bvalot / pyMLST
  whole genome MLST analysis
  ☆50Updated 6 months ago
• MrTomRod / scoary-2
  Calculate assocations between genes and traits
  ☆29Updated 9 months ago
• Ivarz / Conifer
  Calculate confidence scores from Kraken2 output
  ☆23Updated last year
• nekokoe / Plasmer
  An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.
  ☆49Updated 2 years ago
• JosephCrispell / homoplasyFinder
  A tool to identify and annotate homoplasies on a phylogeny and sequence alignment
  ☆21Updated 4 years ago
• tseemann / scapper
  Whole genome core alignments from multiple draft genomes
  ☆13Updated 9 years ago
• gtonkinhill / fastbaps
  A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data
  ☆68Updated 3 years ago
• klebgenomics / Kaptive
  ☆56Updated this week
• jhawkey / IS_mapper
  IS mapping software
  ☆57Updated 4 years ago
• MigleSur / GenAPI
  Gene Absence Presence Identification tool.
  ☆27Updated 8 months ago
• wandreopoulos / deeplasmid
  ☆20Updated last year
• andrewjpage / tiptoft
  Predict plasmids from uncorrected long read data
  ☆41Updated last month
• irycisBioinfo / PATO
  PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.
  ☆62Updated 2 years ago