Alternatives and similar repositories for ma-focus

Users that are interested in ma-focus are comparing it to the libraries listed below

• StatFunGen / pecotmr
  Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆27Updated last week
• MRC-Epid / pGWAS_discovery
  Code repository for Pietzner M, Wheeler E, et al. 2021 "Mapping the proteo-genomic convergence of human diseases"
  ☆24Updated 3 years ago
• globalbiobankmeta / multi-ancestry-pwmr
  Code for GBMI trans-ancestry proteome Mendelian randomization satellite paper
  ☆18Updated last year
• jrs95 / geni.plots
  GENI plots to visualise results from genome-wide association studies
  ☆29Updated 9 months ago
• cnfoley / hyprcoloc
  R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data
  ☆54Updated 4 years ago
• cnfoley / mrclust
  R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.
  ☆17Updated 3 years ago
• jrs95 / gassocplot2
  Regional association plots
  ☆25Updated last year
• dingruofan / xQTLbiolinks
  xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs
  ☆36Updated 5 months ago
• LizaDarrous / PheWAS-cluster
  ☆20Updated 10 months ago
• jingshuw / GRAPPLE
  An R package for Mendelian Randomization
  ☆38Updated last year
• WenjianBI / SPACox
  GWAS for survival analysis in large cohorts
  ☆21Updated 11 months ago
• jwr-git / pwcoco
  Pair-wise conditional analysis and colocalisation
  ☆40Updated last year
• MRCIEU / gwasglue2
  Connecting GWAS summary data to analytical tools
  ☆21Updated last year
• borangao / MESuSiE
  ☆17Updated 7 months ago
• clagiamba / moloc
  ☆35Updated 4 years ago
• hakyimlab / scPrediXcan
  ☆24Updated 2 weeks ago
• huwenboshi / hess
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆42Updated 7 years ago
• precimed / python_convert
  A collection of various utilities for GWAS summary statistics
  ☆28Updated last year
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆45Updated last year
• jean997 / cause
  R package for CAUSE
  ☆56Updated last year
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆52Updated last month
• jrs95 / gassocplot
  Regional association plots
  ☆26Updated last year
• thewonlab / H-MAGMA
  ☆33Updated 2 years ago
• marcoralab / MRcovid
  ☆11Updated 3 years ago
• dongjunchung / GPA
  GPA: Genetic analysis incorporating Pleiotropy and Annotation
  ☆15Updated 5 years ago
• tobyjohnson / gtx
  Genetics ToolboX R package
  ☆32Updated 5 years ago
• Marijn-Schipper / FLAMES
  FLAMES: Accurate gene prioritization in GWAS loci
  ☆38Updated 4 months ago
• mkanai / ldsc-corrplot-rg
  corrplot of LDSC genetic correlation results
  ☆51Updated 3 years ago
• sb452 / mr-code
  Code for implementing Mendelian randomization investigations
  ☆18Updated 9 years ago
• jrs95 / hyprcoloc
  Hypothesis Prioritisation in multi-trait Colocalization
  ☆54Updated last year