opain / TWAS-plotter
R script to make Manhattan-style plot for TWAS
☆37Updated 3 years ago
Alternatives and similar repositories for TWAS-plotter:
Users that are interested in TWAS-plotter are comparing it to the libraries listed below
- R script that performs gene-set or gene property analysis using TWAS results.☆31Updated 5 months ago
- This is a pipeline for calculating weights for TWAS☆30Updated 2 years ago
- ☆18Updated last year
- A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics☆33Updated 2 years ago
- A collection of various utilities for GWAS summary statistics☆27Updated 9 months ago
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆42Updated 6 years ago
- An R package for creating ggplot2 based miami plots.☆16Updated 11 months ago
- Regional association plots☆25Updated 11 months ago
- GENI plots to visualise results from genome-wide association studies☆27Updated 4 months ago
- R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data☆47Updated 4 years ago
- R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.☆15Updated 3 years ago
- Hypothesis Prioritisation in multi-trait Colocalization☆52Updated 10 months ago
- Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.☆21Updated this week
- ☆34Updated 4 years ago
- PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank☆18Updated 2 years ago
- xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs☆30Updated 3 weeks ago
- ☆25Updated 3 years ago
- MR-link 2 is a summary statistics _cis_ MR method that is pleiotropy robust.☆13Updated 3 months ago
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆30Updated last year
- Pleiotropy-informed conditional and conjunctional false discovery rate☆27Updated last year
- Regional association plots☆26Updated 11 months ago
- Tool for predicting TWAS features (e.g. gene expression) in a target sample☆15Updated 2 months ago
- A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.☆28Updated 8 months ago
- LD Score Regression in R☆41Updated last year
- GWAS for survival analysis in large cohorts☆21Updated 7 months ago
- R package for CAUSE☆54Updated last year
- harmonization, liftover, and imputation of summary statistics from GWAS☆31Updated 4 years ago
- Make LocusZoom-like plots with your own LD matrix.☆39Updated 2 years ago
- Partners Biobank genomics data QC☆25Updated 4 years ago
- R script for generating functionally informed genetic risk scores from TWAS☆11Updated last year