R script to make Manhattan-style plot for TWAS
☆41Aug 15, 2021Updated 4 years ago
Alternatives and similar repositories for TWAS-plotter
Users that are interested in TWAS-plotter are comparing it to the libraries listed below
Sorting:
- R script for generating functionally informed genetic risk scores from TWAS☆11Jul 20, 2023Updated 2 years ago
- Tool for predicting TWAS features (e.g. gene expression) in a target sample☆16Jun 24, 2025Updated 8 months ago
- This is a pipeline for calculating weights for TWAS☆33Aug 3, 2022Updated 3 years ago
- R script that performs gene-set or gene property analysis using TWAS results.☆32Sep 11, 2024Updated last year
- Transcriptome-wide association study of Major Depressive Disorder☆12Sep 17, 2020Updated 5 years ago
- Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)☆12Mar 24, 2023Updated 2 years ago
- Create Regional Association Plots☆13Sep 7, 2025Updated 5 months ago
- Integration of TWAS and Colocalization Analysis☆17Oct 29, 2024Updated last year
- Genotype-based Prediction (GenoPred)☆77Feb 20, 2026Updated last week
- Summary-level Unified Method for Modeling Integrated Transcriptome☆10Jun 27, 2023Updated 2 years ago
- ☆24Jan 8, 2026Updated last month
- LOGODetect is a powerful tool to identify small segments that harbor local genetic correlation between two traits/diseases.☆28Jul 30, 2025Updated 7 months ago
- Workflow for performing cistrome-wide associations studies☆11Jul 25, 2022Updated 3 years ago
- ☆15Apr 20, 2021Updated 4 years ago
- ☆21Nov 15, 2024Updated last year
- A powerful TWAS framework leveraging summary-level reference data☆32Apr 1, 2025Updated 10 months ago
- Pleiotropy-informed conditional and conjunctional false discovery rate☆37Jun 3, 2025Updated 8 months ago
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆29Aug 2, 2022Updated 3 years ago
- A collection of various utilities for GWAS summary statistics☆32May 14, 2024Updated last year
- GWAS-TWAS (Transcriptome-wide association study)-Pharmacological library integration pipeline☆19Mar 30, 2021Updated 4 years ago
- Convert GWAS sumstat files into a common format with a common reference for positions, rsids and effect alleles.☆24Sep 4, 2025Updated 5 months ago
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Oct 6, 2023Updated 2 years ago
- Leveraging functional information to improve GWAS summary statistic imputation☆19Aug 10, 2021Updated 4 years ago
- ☆57Jan 16, 2025Updated last year
- ☆19Sep 20, 2021Updated 4 years ago
- xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs☆40Feb 8, 2025Updated last year
- ☆27Aug 20, 2020Updated 5 years ago
- Python script for multivariate GWAS meta-analysis☆24Dec 6, 2024Updated last year
- ☆20Sep 12, 2025Updated 5 months ago
- A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics☆39Sep 18, 2025Updated 5 months ago
- Fine-mapping method only using summary statistics☆20Mar 23, 2016Updated 9 years ago
- Methods for converting eQTL summary statistics into TWAS SNP-weights☆13Jul 2, 2025Updated 7 months ago
- Pair-wise conditional analysis and colocalisation☆42May 2, 2024Updated last year
- ☆30Oct 18, 2021Updated 4 years ago
- lhcMR☆26Mar 24, 2024Updated last year
- ☆19Aug 7, 2025Updated 6 months ago
- Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.☆21Aug 19, 2025Updated 6 months ago
- Regional association plots☆26Apr 1, 2024Updated last year
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆42May 2, 2018Updated 7 years ago