opain / TWAS-plotterLinks
R script to make Manhattan-style plot for TWAS
☆38Updated 3 years ago
Alternatives and similar repositories for TWAS-plotter
Users that are interested in TWAS-plotter are comparing it to the libraries listed below
Sorting:
- This is a pipeline for calculating weights for TWAS☆32Updated 2 years ago
- R script that performs gene-set or gene property analysis using TWAS results.☆32Updated 10 months ago
- ☆19Updated last year
- An R package for creating ggplot2 based miami plots.☆17Updated 4 months ago
- A collection of various utilities for GWAS summary statistics☆28Updated last year
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆42Updated 7 years ago
- S-LDSC scripts for use on MR server.☆10Updated 3 years ago
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Updated last year
- A powerful TWAS framework leveraging summary-level reference data☆30Updated 3 months ago
- A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics☆34Updated 3 weeks ago
- Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.☆27Updated last week
- Regional association plots☆25Updated last year
- MR-link-2: pleiotropy robust cis MR☆17Updated 2 months ago
- Summary-level Unified Method for Modeling Integrated Transcriptome☆10Updated 2 years ago
- ☆35Updated 4 years ago
- Create Regional Association Plots☆12Updated 11 months ago
- Colocalization analysis of genetic association signals☆52Updated last month
- ☆57Updated 6 months ago
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆31Updated last month
- This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…☆36Updated 9 months ago
- Make LocusZoom-like plots with your own LD matrix.☆43Updated 3 years ago
- xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs☆37Updated 5 months ago
- R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.☆17Updated 3 years ago
- Integration of TWAS and Colocalization Analysis☆17Updated 8 months ago
- GENI plots to visualise results from genome-wide association studies☆29Updated 9 months ago
- GWAS summary statistics files QC tool☆40Updated 6 months ago
- Methods for converting eQTL summary statistics into TWAS SNP-weights☆13Updated 2 weeks ago
- GWAS for survival analysis in large cohorts☆21Updated 11 months ago
- UTMOST (unified test for molecular signatures) is a method for cross-tissue gene expression imputation for transcriptome-wide association…☆38Updated last year
- Discovery of genetic variants with shared effect across multiple phenotypes from GWAS summary statistics☆14Updated last year