Alternatives and similar repositories for TWAS-plotter

Users that are interested in TWAS-plotter are comparing it to the libraries listed below

• opain / TWAS-GSEA
  R script that performs gene-set or gene property analysis using TWAS results.
  ☆31Updated 8 months ago
• opain / Calculating-FUSION-TWAS-weights-pipeline
  This is a pipeline for calculating weights for TWAS
  ☆32Updated 2 years ago
• cuelee / pleio
  ☆19Updated last year
• huwenboshi / hess
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆42Updated 7 years ago
• juliedwhite / miamiplot
  An R package for creating ggplot2 based miami plots.
  ☆16Updated 2 months ago
• RayDebashree / PLACO
  A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics
  ☆33Updated 3 years ago
• jrs95 / gassocplot2
  Regional association plots
  ☆25Updated last year
• precimed / python_convert
  A collection of various utilities for GWAS summary statistics
  ☆27Updated last year
• adriaan-vd-graaf / mrlink2
  MR-link-2: pleiotropy robust cis MR
  ☆15Updated last week
• astheeggeggs / PHESANT
  PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank
  ☆19Updated 2 years ago
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆31Updated last year
• dingruofan / xQTLbiolinks
  xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs
  ☆33Updated 3 months ago
• YuyingLi-X / HDL-L
  The local version of high-definition likelihood inference of genetic correlations (HDL-L)
  ☆11Updated 2 weeks ago
• jrs95 / geni.plots
  GENI plots to visualise results from genome-wide association studies
  ☆27Updated 7 months ago
• opain / Predicting-TWAS-features
  Tool for predicting TWAS features (e.g. gene expression) in a target sample
  ☆16Updated 5 months ago
• ckhunsr1 / PUMICE
  PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics
  ☆12Updated last year
• StatFunGen / pecotmr
  Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆25Updated this week
• cnfoley / mrclust
  R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.
  ☆15Updated 3 years ago
• cnfoley / hyprcoloc
  R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data
  ☆48Updated 4 years ago
• opain / Inferred-functional-risk-scoring
  R script for generating functionally informed genetic risk scores from TWAS
  ☆11Updated last year
• jokamoto97 / INTACT
  Integration of TWAS and Colocalization Analysis
  ☆17Updated 6 months ago
• cgrace1978 / manhplot
  Manhattan++
  ☆28Updated last year
• brielin / Popcorn
  Software for estimating correlation of trait effect sizes across populations
  ☆46Updated last month
• xtonyjiang / GNOVA
  A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.
  ☆28Updated 11 months ago
• opain / GenoPred
  Genotype-based Prediction (GenoPred)
  ☆72Updated this week
• daiqile96 / OTTERS
  A powerful TWAS framework leveraging summary-level reference data
  ☆29Updated last month
• wuyangf7 / OPERA
  This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…
  ☆35Updated 7 months ago
• getian107 / SuSiEx
  Cross-population fine-mapping
  ☆35Updated 5 months ago
• jrs95 / hyprcoloc
  Hypothesis Prioritisation in multi-trait Colocalization
  ☆53Updated last year
• BioPsyk / cleansumstats
  Convert GWAS sumstat files into a common format with a common reference for positions, rsids and effect alleles.
  ☆17Updated 3 months ago