opain / TWAS-plotterLinks
R script to make Manhattan-style plot for TWAS
☆41Updated 4 years ago
Alternatives and similar repositories for TWAS-plotter
Users that are interested in TWAS-plotter are comparing it to the libraries listed below
Sorting:
- This is a pipeline for calculating weights for TWAS☆32Updated 3 years ago
- ☆19Updated 5 months ago
- R script that performs gene-set or gene property analysis using TWAS results.☆32Updated last year
- Regional association plots☆24Updated last year
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆35Updated 7 months ago
- Manhattan++☆28Updated last year
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆42Updated 7 years ago
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Updated 2 years ago
- A collection of various utilities for GWAS summary statistics☆32Updated last year
- Colocalization analysis of genetic association signals☆53Updated 7 months ago
- A powerful TWAS framework leveraging summary-level reference data☆32Updated 9 months ago
- S-LDSC scripts for use on MR server.☆10Updated 4 years ago
- ☆57Updated last year
- An R package for creating ggplot2 based miami plots.☆18Updated 10 months ago
- Make LocusZoom-like plots with your own LD matrix.☆48Updated 3 years ago
- Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.☆42Updated 2 years ago
- This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…☆35Updated last year
- ☆38Updated 4 years ago
- Convert GWAS sumstat files into a common format with a common reference for positions, rsids and effect alleles.☆23Updated 4 months ago
- A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics☆38Updated 4 months ago
- corrplot of LDSC genetic correlation results☆56Updated 3 years ago
- Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.☆31Updated this week
- Visualization of Colocalization Between eQTL and GWAS Data☆87Updated 3 years ago
- A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.☆31Updated last year
- xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs☆38Updated 11 months ago
- Create Regional Association Plots☆13Updated 4 months ago
- ☆23Updated last week
- Summary-level Unified Method for Modeling Integrated Transcriptome☆10Updated 2 years ago
- Methods for converting eQTL summary statistics into TWAS SNP-weights☆13Updated 6 months ago
- ☆21Updated 5 months ago