jokamoto97 / INTACT
Integration of TWAS and Colocalization Analysis
☆14Updated 3 months ago
Alternatives and similar repositories for INTACT:
Users that are interested in INTACT are comparing it to the libraries listed below
- Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)☆12Updated last year
- Create Regional Association Plots☆11Updated 6 months ago
- Summary-level Unified Method for Modeling Integrated Transcriptome☆10Updated last year
- Methods for converting eQTL summary statistics into TWAS SNP-weights☆13Updated 9 months ago
- R package for "Multi-tissue Transcriptome-Wide Association Studies (MTWAS)"☆14Updated 6 months ago
- Estimate genetic correlation using predicted expression☆21Updated 6 years ago
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Updated last year
- Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.☆18Updated 2 years ago
- Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data☆13Updated 2 months ago
- An R package for creating ggplot2 based miami plots.☆16Updated 10 months ago
- Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.☆20Updated this week
- GENI plots to visualise results from genome-wide association studies☆27Updated 3 months ago
- Tool for predicting TWAS features (e.g. gene expression) in a target sample☆15Updated last month
- Fine-mapping method only using summary statistics☆18Updated 8 years ago
- ☆8Updated last year
- MR-link 2 is a summary statistics _cis_ MR method that is pleiotropy robust.☆13Updated last month
- This is a pipeline for calculating weights for TWAS☆30Updated 2 years ago
- Regional association plots☆25Updated 9 months ago
- GWAS genetics Fine-mapping method☆21Updated 3 months ago
- Collaborative genetic studies of idiopathic pulmonary fibrosis☆16Updated last month
- ☆19Updated 5 months ago
- ☆18Updated 11 months ago
- ☆18Updated 2 months ago
- Code for implementing Mendelian randomization investigations☆15Updated 9 years ago
- R script for generating functionally informed genetic risk scores from TWAS☆11Updated last year
- Software to infer latent pleiotropic components from GWAS summary data☆13Updated this week
- Code supporting analyses in paper on fine-mapping AD loci☆15Updated 3 years ago
- ☆14Updated 3 years ago
- R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.☆14Updated 3 years ago
- ☆16Updated last month