Alternatives and similar repositories for Trans-Phar:

Users that are interested in Trans-Phar are comparing it to the libraries listed below

• jinghuazhao / EWAS-fusion
  Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)
  ☆12Updated 2 years ago
• ChongWuLab / SUMMIT
  Summary-level Unified Method for Modeling Integrated Transcriptome
  ☆10Updated last year
• hakyimlab / brainxcan
  ☆8Updated 2 months ago
• bogdanlab / RHOGE
  Estimate genetic correlation using predicted expression
  ☆22Updated 7 years ago
• ckhunsr1 / PUMICE
  PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics
  ☆12Updated last year
• szcf-weiya / MTWAS
  R package for "Multi-tissue Transcriptome-Wide Association Studies (MTWAS)"
  ☆14Updated 8 months ago
• opain / eQTL_to_TWAS
  Methods for converting eQTL summary statistics into TWAS SNP-weights
  ☆13Updated 11 months ago
• ghm17 / LOGODetect
  LOGODetect is a powerful tool to identify small segments that harbor local genetic correlation between two traits/diseases.
  ☆27Updated last year
• qlu-lab / SUPERGNOVA
  ☆26Updated 3 years ago
• jrs95 / geni.plots
  GENI plots to visualise results from genome-wide association studies
  ☆27Updated 5 months ago
• ylaboratory / seismic
  Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data
  ☆14Updated 4 months ago
• jokamoto97 / INTACT
  Integration of TWAS and Colocalization Analysis
  ☆15Updated 5 months ago
• hailianghuang / FM-summary
  Fine-mapping method only using summary statistics
  ☆18Updated 9 years ago
• hakyimlab / scPrediXcan
  ☆13Updated 3 weeks ago
• opain / MDD-TWAS
  Transcriptome-wide association study of Major Depressive Disorder
  ☆12Updated 4 years ago
• mglev1n / locusplotr
  Create Regional Association Plots
  ☆11Updated 8 months ago
• StatFunGen / pecotmr
  Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆23Updated last week
• marcoralab / MRcovid
  ☆11Updated 2 years ago
• yuanzhongshang / PMR
  ☆23Updated 4 years ago
• scbaca / cwas
  Workflow for performing cistrome-wide associations studies
  ☆10Updated 2 years ago
• ZhaotongL / cisMRcML
  ☆11Updated 9 months ago
• immunogenomics / cov-ldsc
  ☆11Updated 2 years ago
• precimed / gsa-mixer
  ☆14Updated last month
• cnfoley / mrclust
  R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.
  ☆15Updated 3 years ago
• mancusolab / ma-focus
  MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets
  ☆26Updated 11 months ago
• ZikunY / CARMA
  GWAS genetics Fine-mapping method
  ☆22Updated 5 months ago
• TiffanyAmariuta / TCSC
  TCSC (Tissue co-regulation score regression) is a statistical genetics method to identify causal tissues in diseases and complex traits.
  ☆13Updated 5 months ago
• Marijn-Schipper / FLAMES
  FLAMES: Accurate gene prioritization in GWAS loci
  ☆31Updated 3 weeks ago
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆31Updated 4 years ago
• YangLabHKUST / XPASS
  Cross-population analysis using GWAS summary statistics
  ☆18Updated 9 months ago