GWAS-TWAS (Transcriptome-wide association study)-Pharmacological library integration pipeline
☆19Mar 30, 2021Updated 4 years ago
Alternatives and similar repositories for Trans-Phar
Users that are interested in Trans-Phar are comparing it to the libraries listed below
Sorting:
- Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)☆12Mar 24, 2023Updated 2 years ago
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Oct 6, 2023Updated 2 years ago
- Integration of TWAS and Colocalization Analysis☆17Oct 29, 2024Updated last year
- Summary-level Unified Method for Modeling Integrated Transcriptome☆10Jun 27, 2023Updated 2 years ago
- Single cell Type Enrichment Analysis for Phenotypes (STEAP)☆14Jun 16, 2021Updated 4 years ago
- Methods for converting eQTL summary statistics into TWAS SNP-weights☆14Jul 2, 2025Updated 8 months ago
- Workflow for performing cistrome-wide associations studies☆11Jul 25, 2022Updated 3 years ago
- TCSC (Tissue co-regulation score regression) is a statistical genetics method to identify causal tissues in diseases and complex traits.☆15Oct 3, 2024Updated last year
- LOGODetect is a powerful tool to identify small segments that harbor local genetic correlation between two traits/diseases.☆28Jul 30, 2025Updated 7 months ago
- Leveraging functional information to improve GWAS summary statistic imputation☆19Aug 10, 2021Updated 4 years ago
- Tool for predicting TWAS features (e.g. gene expression) in a target sample☆16Jun 24, 2025Updated 8 months ago
- Python script for multivariate GWAS meta-analysis☆24Dec 6, 2024Updated last year
- Estimate Bias Due To Sample Overlap In Mendelian Randomization Studies☆11Sep 1, 2022Updated 3 years ago
- ☆20Sep 12, 2025Updated 5 months ago
- Regional association plots☆26Apr 1, 2024Updated last year
- Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)☆10Jan 26, 2026Updated last month
- ☆11Mar 16, 2022Updated 3 years ago
- Code to reproduce analysis and figures for 'Genetic mapping of etiologic brain cell types for obesity' (Timshel, eLife 2020)☆14May 20, 2021Updated 4 years ago
- EXpression PREdiction with Summary Statistics Only☆13Dec 10, 2025Updated 2 months ago
- Perform cell-stratified MR analysis through integrating GWAS and QTL data☆35Jan 28, 2026Updated last month
- metaUSAT is a data-adaptive statistical approach for testing genetic associations of multiple traits from single/multiple studies using u…☆21May 27, 2021Updated 4 years ago
- Heritability, genetic correlation and functional enrichment estimation for case-control studies☆19Nov 26, 2023Updated 2 years ago
- ☆21Nov 15, 2024Updated last year
- R script for generating functionally informed genetic risk scores from TWAS☆11Jul 20, 2023Updated 2 years ago
- hJAM is a hierarchical model which unifies the framework of Mendelian Randomization and Transcriptome-wide association studies.☆10Jan 19, 2024Updated 2 years ago
- Create Regional Association Plots☆13Sep 7, 2025Updated 5 months ago
- Open4Gene, A Hurdle Model-based Method for Peak-to-Gene Linkage Analysis☆16Dec 1, 2025Updated 3 months ago
- MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets☆39Apr 26, 2024Updated last year
- GWAS Summary Statistics for Brain Imaging Phenotypes☆20Sep 6, 2021Updated 4 years ago
- A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics☆39Sep 18, 2025Updated 5 months ago
- ☆24Jan 8, 2026Updated last month
- A software package for performing and visualising radial multivariable Mendelian randomization analyses☆12Nov 28, 2025Updated 3 months ago
- ☆15Apr 20, 2021Updated 4 years ago
- Multi-Omic Strategies for TWAS☆13Mar 27, 2023Updated 2 years ago
- Software to infer latent pleiotropic components from GWAS summary data☆15Jan 30, 2025Updated last year
- ☆35Jun 15, 2023Updated 2 years ago
- ☆27Aug 20, 2020Updated 5 years ago
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆42May 2, 2018Updated 7 years ago
- Stratified squared trans-ethnic genetic correlation☆14May 12, 2022Updated 3 years ago