Alternatives and similar repositories for mvGWAMA

Users that are interested in mvGWAMA are comparing it to the libraries listed below

• thewonlab / H-MAGMA
  ☆35Updated 2 years ago
• huwenboshi / s-ldxr
  Stratified squared trans-ethnic genetic correlation
  ☆14Updated 3 years ago
• ghm17 / LOGODetect
  LOGODetect is a powerful tool to identify small segments that harbor local genetic correlation between two traits/diseases.
  ☆27Updated 2 months ago
• marcoralab / MRcovid
  ☆13Updated 3 years ago
• GP2code / GP2-Multiancestry-metaGWAS
  ☆12Updated 2 years ago
• jrs95 / geni.plots
  GENI plots to visualise results from genome-wide association studies
  ☆30Updated 11 months ago
• bhattacharya-a-bt / isotwas
  ☆23Updated 2 months ago
• StatFunGen / pecotmr
  Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆30Updated last week
• szcf-weiya / MTWAS
  R package for "Multi-tissue Transcriptome-Wide Association Studies (MTWAS)"
  ☆15Updated 3 weeks ago
• precimed / python_convert
  A collection of various utilities for GWAS summary statistics
  ☆32Updated last year
• Jeremy37 / AD_finemap
  Code supporting analyses in paper on fine-mapping AD loci
  ☆16Updated 4 years ago
• yanglab-emory / TIGAR
  ☆22Updated 3 weeks ago
• cuelee / pleio
  ☆19Updated 2 months ago
• huwenboshi / hess
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆41Updated 7 years ago
• immunogenomics / cov-ldsc
  ☆11Updated 2 years ago
• ChongWuLab / SUMMIT
  Summary-level Unified Method for Modeling Integrated Transcriptome
  ☆10Updated 2 years ago
• bvoightlab / ColocQuiaL
  Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.
  ☆20Updated last month
• xqwen / ptwas
  ☆18Updated 4 years ago
• Jmtorres138 / TACTICAL
  Tissue of ACTion scores for Investigating Complex trait-Associated Loci
  ☆13Updated 4 years ago
• bogdanlab / RHOGE
  Estimate genetic correlation using predicted expression
  ☆22Updated 7 years ago
• hailianghuang / FM-summary
  Fine-mapping method only using summary statistics
  ☆20Updated 9 years ago
• mancusolab / FactorGo
  Software to infer latent pleiotropic components from GWAS summary data
  ☆15Updated 8 months ago
• Marijn-Schipper / FLAMES
  FLAMES: Accurate gene prioritization in GWAS loci
  ☆45Updated 7 months ago
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆33Updated 5 years ago
• explodecomputer / random-metal
  Adding random effects model to the METAL software
  ☆14Updated 2 years ago
• RajLabMSSM / ggLocusZoom
  Create LocusZoom-style plots in R.
  ☆22Updated 2 years ago
• scbaca / cwas
  Workflow for performing cistrome-wide associations studies
  ☆10Updated 3 years ago
• borangao / MESuSiE
  ☆20Updated 2 months ago
• yiminghu / post-GWAS-pipeline
  A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data
  ☆29Updated 3 years ago
• jokamoto97 / INTACT
  Integration of TWAS and Colocalization Analysis
  ☆17Updated 11 months ago