dongjunchung / GPALinks
GPA: Genetic analysis incorporating Pleiotropy and Annotation
☆15Updated 5 years ago
Alternatives and similar repositories for GPA
Users that are interested in GPA are comparing it to the libraries listed below
Sorting:
- GENI plots to visualise results from genome-wide association studies☆27Updated 7 months ago
- Fine-mapping method only using summary statistics☆18Updated 9 years ago
- R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.☆15Updated 3 years ago
- Code for implementing Mendelian randomization investigations☆17Updated 9 years ago
- Estimate genetic correlation using predicted expression☆22Updated 7 years ago
- Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.☆25Updated this week
- GWAS for survival analysis in large cohorts☆21Updated 10 months ago
- Code repository for Pietzner M, Wheeler E, et al. 2021 "Mapping the proteo-genomic convergence of human diseases"☆23Updated 3 years ago
- Regional association plots☆25Updated last year
- Code for GBMI trans-ancestry proteome Mendelian randomization satellite paper☆18Updated last year
- ☆20Updated 9 months ago
- ☆11Updated 2 years ago
- Summary-level Unified Method for Modeling Integrated Transcriptome☆10Updated last year
- MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets☆32Updated last year
- ☆19Updated last year
- Regional association plots☆26Updated last year
- FLAMES: Accurate gene prioritization in GWAS loci☆36Updated 3 months ago
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆42Updated 7 years ago
- Integration of TWAS and Colocalization Analysis☆17Updated 7 months ago
- A collection of various utilities for GWAS summary statistics☆27Updated last year
- harmonization, liftover, and imputation of summary statistics from GWAS☆32Updated 4 years ago
- Polynomial Mendelian randomization for the inference of non-linear causal effects☆13Updated 2 years ago
- R package that contains plink binaries for windows, mac and linux☆10Updated 5 years ago
- Create Regional Association Plots☆12Updated 10 months ago
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Updated last year
- An R package for creating ggplot2 based miami plots.☆17Updated 3 months ago
- ☆16Updated 3 months ago
- A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.☆29Updated last year
- A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics☆33Updated 3 years ago
- Software to perform multi-ancestry SNP fine-mapping on molecular data☆21Updated 7 months ago