dongjunchung / GPA
GPA: Genetic analysis incorporating Pleiotropy and Annotation
☆12Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for GPA
- Estimate genetic correlation using predicted expression☆19Updated 6 years ago
- Fine-mapping method only using summary statistics☆15Updated 8 years ago
- GENI plots to visualise results from genome-wide association studies☆21Updated 3 weeks ago
- Code for implementing Mendelian randomization investigations☆15Updated 9 years ago
- Regional association plots☆25Updated 7 months ago
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆11Updated last year
- A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.☆24Updated 5 months ago
- Regional association plots☆25Updated 7 months ago
- ☆17Updated 8 months ago
- An R package for creating ggplot2 based miami plots.☆16Updated 8 months ago
- MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets☆24Updated 6 months ago
- Summary-level Unified Method for Modeling Integrated Transcriptome☆10Updated last year
- harmonization, liftover, and imputation of summary statistics from GWAS☆32Updated 4 years ago
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆39Updated 6 years ago
- Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)☆12Updated last year
- Integration of TWAS and Colocalization Analysis☆13Updated last week
- Code repository for Pietzner M, Wheeler E, et al. 2021 "Mapping the proteo-genomic convergence of human diseases"☆23Updated 3 years ago
- An R package for generating comparative regional association plots☆18Updated 4 years ago
- Create Regional Association Plots☆10Updated 3 months ago
- Pair-wise enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.☆17Updated this week
- A collection of various utilities for GWAS summary statistics☆26Updated 5 months ago
- ☆18Updated 6 years ago
- Leveraging functional information to improve GWAS summary statistic imputation☆20Updated 3 years ago
- Primo☆16Updated 3 years ago
- Code supporting analyses in paper on fine-mapping AD loci☆15Updated 3 years ago
- ☆20Updated last week
- ☆11Updated 2 years ago
- Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.☆18Updated 2 years ago
- Software to infer latent pleiotropic components from GWAS summary data☆12Updated last month
- Pleiotropy-informed conditional and conjunctional false discovery rate☆24Updated 11 months ago