Alternatives and similar repositories for SUPERGNOVA

Users that are interested in SUPERGNOVA are comparing it to the libraries listed below

• huwenboshi / hess
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆41Updated 7 years ago
• RayDebashree / PLACO
  A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics
  ☆36Updated 3 weeks ago
• precimed / gsa-mixer
  ☆20Updated 3 weeks ago
• cuelee / pleio
  ☆19Updated 2 months ago
• cnfoley / hyprcoloc
  R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data
  ☆56Updated 4 years ago
• daiqile96 / OTTERS
  A powerful TWAS framework leveraging summary-level reference data
  ☆31Updated 6 months ago
• dingruofan / xQTLbiolinks
  xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs
  ☆37Updated 8 months ago
• jrs95 / hyprcoloc
  Hypothesis Prioritisation in multi-trait Colocalization
  ☆54Updated last year
• BioPsyk / cleansumstats
  Convert GWAS sumstat files into a common format with a common reference for positions, rsids and effect alleles.
  ☆20Updated last month
• jean997 / cause
  R package for CAUSE
  ☆56Updated last year
• clagiamba / moloc
  ☆37Updated 4 years ago
• ckhunsr1 / PUMICE
  PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics
  ☆12Updated 2 years ago
• xtonyjiang / GNOVA
  A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.
  ☆31Updated last year
• Marijn-Schipper / FLAMES
  FLAMES: Accurate gene prioritization in GWAS loci
  ☆45Updated 7 months ago
• jrs95 / gassocplot2
  Regional association plots
  ☆25Updated last year
• rhhao / csMR
  Perform cell-stratified MR analysis through integrating GWAS and QTL data
  ☆33Updated 2 months ago
• gamazonlab / MR-JTI
  ☆57Updated 8 months ago
• cnfoley / mrclust
  R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.
  ☆17Updated 3 years ago
• opain / TWAS-plotter
  R script to make Manhattan-style plot for TWAS
  ☆40Updated 4 years ago
• ghm17 / LOGODetect
  LOGODetect is a powerful tool to identify small segments that harbor local genetic correlation between two traits/diseases.
  ☆27Updated 2 months ago
• StatFunGen / pecotmr
  Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆30Updated last week
• josefin-werme / LAVA
  ☆76Updated this week
• brielin / Popcorn
  Software for estimating correlation of trait effect sizes across populations
  ☆49Updated 4 months ago
• RHReynolds / LDSCforRyten
  S-LDSC scripts for use on MR server.
  ☆10Updated 4 years ago
• WenjianBI / SPACox
  GWAS for survival analysis in large cohorts
  ☆22Updated last year
• opain / TWAS-GSEA
  R script that performs gene-set or gene property analysis using TWAS results.
  ☆32Updated last year
• hakyimlab / scPrediXcan
  ☆31Updated 3 months ago
• mglev1n / ldscr
  LD Score Regression in R
  ☆49Updated last month
• precimed / pleiofdr
  Pleiotropy-informed conditional and conjunctional false discovery rate
  ☆33Updated 4 months ago
• jrs95 / gassocplot
  Regional association plots
  ☆26Updated last year