bogdanlab / fiziLinks
Leveraging functional information to improve GWAS summary statistic imputation
☆19Updated 3 years ago
Alternatives and similar repositories for fizi
Users that are interested in fizi are comparing it to the libraries listed below
Sorting:
- R script that performs gene-set or gene property analysis using TWAS results.☆32Updated 10 months ago
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆41Updated 7 years ago
- A collection of various utilities for GWAS summary statistics☆29Updated last year
- ☆19Updated last year
- Fine-mapping method only using summary statistics☆20Updated 9 years ago
- FOCUS: Fine-mapping Of CaUsal gene Sets☆46Updated last year
- Estimate genetic correlation using predicted expression☆22Updated 7 years ago
- An R package for creating ggplot2 based miami plots.☆17Updated 5 months ago
- Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.☆27Updated last week
- A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.☆30Updated last year
- R script to make Manhattan-style plot for TWAS☆38Updated 3 years ago
- Colocalization analysis of genetic association signals☆52Updated last month
- ☆57Updated 6 months ago
- harmonization, liftover, and imputation of summary statistics from GWAS☆33Updated 4 years ago
- This is a pipeline for calculating weights for TWAS☆32Updated 3 years ago
- GENI plots to visualise results from genome-wide association studies☆29Updated 9 months ago
- Regional association plots☆25Updated last year
- CoMorMent-Containers☆30Updated 4 months ago
- ☆18Updated this week
- A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics☆34Updated last month
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Updated last year
- Discovery of genetic variants with shared effect across multiple phenotypes from GWAS summary statistics☆14Updated last year
- MR-link-2: pleiotropy robust cis MR☆18Updated this week
- This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…☆36Updated 10 months ago
- A powerful TWAS framework leveraging summary-level reference data☆31Updated 4 months ago
- Create Regional Association Plots☆12Updated last year
- Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.☆38Updated 2 years ago
- Mediated Expression Score Regression (MESC)☆26Updated 3 years ago
- Summary-level Unified Method for Modeling Integrated Transcriptome☆10Updated 2 years ago
- Convert GWAS sumstat files into a common format with a common reference for positions, rsids and effect alleles.☆19Updated last month