bogdanlab / fizi
Leveraging functional information to improve GWAS summary statistic imputation
☆20Updated 3 years ago
Alternatives and similar repositories for fizi:
Users that are interested in fizi are comparing it to the libraries listed below
- FOCUS: Fine-mapping Of CaUsal gene Sets☆44Updated last year
- Estimate genetic correlation using predicted expression☆21Updated 6 years ago
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆41Updated 6 years ago
- Fine-mapping method only using summary statistics☆18Updated 8 years ago
- Here we develop the software for the method LDpredfunct described in https://www.biorxiv.org/content/early/2018/07/24/375337☆17Updated 4 months ago
- harmonization, liftover, and imputation of summary statistics from GWAS☆31Updated 4 years ago
- Colocalization analysis of genetic association signals☆50Updated last month
- Colocalisation pipeline for Open Targets Genetics☆16Updated 2 years ago
- Regional association plots☆25Updated 9 months ago
- ☆18Updated 10 months ago
- ☆32Updated last year
- R script that performs gene-set or gene property analysis using TWAS results.☆31Updated 4 months ago
- ☆21Updated 2 months ago
- Regional association plots☆25Updated 9 months ago
- Code for implementing Mendelian randomization investigations☆15Updated 9 years ago
- ☆34Updated 3 years ago
- Primo☆16Updated 3 years ago
- A collection of various utilities for GWAS summary statistics☆26Updated 8 months ago
- Manhattan++☆28Updated 11 months ago
- A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.☆28Updated 7 months ago
- An R package for creating ggplot2 based miami plots.☆16Updated 10 months ago
- GENI plots to visualise results from genome-wide association studies☆26Updated 3 months ago
- Software to perform multi-ancestry SNP fine-mapping on molecular data☆19Updated 2 months ago
- A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.☆21Updated this week
- Mediated Expression Score Regression (MESC)☆26Updated 2 years ago
- Code supporting analyses in paper on fine-mapping AD loci☆15Updated 3 years ago
- Older repo for MRLocus. See new website for software usage guide:☆15Updated last year
- PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank☆18Updated 2 years ago
- Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform …☆26Updated last year
- An R package for creating mirrored Manhattan plots☆18Updated 2 years ago