Leveraging functional information to improve GWAS summary statistic imputation
☆20Aug 10, 2021Updated 4 years ago
Alternatives and similar repositories for fizi
Users that are interested in fizi are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Stratified squared trans-ethnic genetic correlation☆14May 12, 2022Updated 3 years ago
- Summary-level Unified Method for Modeling Integrated Transcriptome☆10Jun 27, 2023Updated 2 years ago
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Oct 6, 2023Updated 2 years ago
- Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform …☆30Jun 18, 2023Updated 2 years ago
- FOCUS: Fine-mapping Of CaUsal gene Sets☆48Aug 30, 2023Updated 2 years ago
- Workflow for performing cistrome-wide associations studies☆11Jul 25, 2022Updated 3 years ago
- methods for functional summary-based imputation☆97Mar 17, 2026Updated last week
- Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)☆12Mar 24, 2023Updated 3 years ago
- Integration of TWAS and Colocalization Analysis☆17Oct 29, 2024Updated last year
- A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics☆39Sep 18, 2025Updated 6 months ago
- GWAS-TWAS (Transcriptome-wide association study)-Pharmacological library integration pipeline☆19Mar 30, 2021Updated 4 years ago
- LOGODetect is a powerful tool to identify small segments that harbor local genetic correlation between two traits/diseases.☆28Jul 30, 2025Updated 7 months ago
- ☆21Nov 15, 2024Updated last year
- R script that performs gene-set or gene property analysis using TWAS results.☆33Sep 11, 2024Updated last year
- Methods for converting eQTL summary statistics into TWAS SNP-weights☆14Jul 2, 2025Updated 8 months ago
- Software to infer latent pleiotropic components from GWAS summary data☆15Jan 30, 2025Updated last year
- ☆21Sep 12, 2025Updated 6 months ago
- ☆24Jan 8, 2026Updated 2 months ago
- ☆15Apr 20, 2021Updated 4 years ago
- A powerful TWAS framework leveraging summary-level reference data☆33Apr 1, 2025Updated 11 months ago
- Software implementing the Latent Causal Variable Model☆65Jun 30, 2020Updated 5 years ago
- ☆57Jan 16, 2025Updated last year
- ☆35Jun 15, 2023Updated 2 years ago
- Estimate genetic correlation using predicted expression☆25Mar 8, 2018Updated 8 years ago
- hJAM is a hierarchical model which unifies the framework of Mendelian Randomization and Transcriptome-wide association studies.☆10Jan 19, 2024Updated 2 years ago
- Code to reproduce analysis and figures for 'Genetic mapping of etiologic brain cell types for obesity' (Timshel, eLife 2020)☆14May 20, 2021Updated 4 years ago
- Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.☆21Aug 19, 2025Updated 7 months ago
- Convert GWAS sumstat files into a common format with a common reference for positions, rsids and effect alleles.☆24Sep 4, 2025Updated 6 months ago
- ☆27Aug 20, 2020Updated 5 years ago
- CELLEX (CELL-type EXpression-specificity)☆44Jun 2, 2023Updated 2 years ago
- Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.☆45Mar 16, 2026Updated last week
- ☆11Mar 16, 2022Updated 4 years ago
- Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)☆10Jan 26, 2026Updated last month
- BrainSeq Phase II project lead by LIBD for the BrainSeq Consortium☆11Jan 7, 2024Updated 2 years ago
- This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…☆35Sep 26, 2024Updated last year
- lhcMR☆26Mar 24, 2024Updated 2 years ago
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆42May 2, 2018Updated 7 years ago
- Pleiotropy-informed conditional and conjunctional false discovery rate☆37Jun 3, 2025Updated 9 months ago
- metaUSAT is a data-adaptive statistical approach for testing genetic associations of multiple traits from single/multiple studies using u…☆21May 27, 2021Updated 4 years ago