Alternatives and similar repositories for XPASS

Users that are interested in XPASS are comparing it to the libraries listed below

• StatFunGen / pecotmr
  Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆30Updated last week
• mancusolab / ma-focus
  MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets
  ☆38Updated last year
• precimed / pleiofdr
  Pleiotropy-informed conditional and conjunctional false discovery rate
  ☆35Updated 5 months ago
• TiffanyAmariuta / TCSC
  TCSC (Tissue co-regulation score regression) is a statistical genetics method to identify causal tissues in diseases and complex traits.
  ☆13Updated last year
• yuanzhongshang / PMR
  ☆27Updated 5 years ago
• ChongWuLab / SUMMIT
  Summary-level Unified Method for Modeling Integrated Transcriptome
  ☆10Updated 2 years ago
• scbaca / cwas
  Workflow for performing cistrome-wide associations studies
  ☆10Updated 3 years ago
• borangao / MESuSiE
  ☆21Updated 3 months ago
• huwenboshi / hess
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆42Updated 7 years ago
• cuelee / pleio
  ☆19Updated 3 months ago
• mancusolab / FactorGo
  Software to infer latent pleiotropic components from GWAS summary data
  ☆15Updated 9 months ago
• marcoralab / MRcovid
  ☆13Updated 3 years ago
• konumat / Trans-Phar
  GWAS-TWAS (Transcriptome-wide association study)-Pharmacological library integration pipeline
  ☆19Updated 4 years ago
• LizaDarrous / PheWAS-cluster
  ☆21Updated last year
• jinghuazhao / EWAS-fusion
  Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)
  ☆12Updated 2 years ago
• hakyimlab / scPrediXcan
  ☆34Updated last week
• cnfoley / mrclust
  R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.
  ☆17Updated 4 years ago
• jingshuw / GRAPPLE
  An R package for Mendelian Randomization
  ☆38Updated last year
• opain / Predicting-TWAS-features
  Tool for predicting TWAS features (e.g. gene expression) in a target sample
  ☆16Updated 4 months ago
• RayDebashree / PLACO
  A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics
  ☆36Updated 2 months ago
• BennyStrobes / TGFM
  Tissue-Gene Fine-Mapping
  ☆26Updated 7 months ago
• bogdanlab / RHOGE
  Estimate genetic correlation using predicted expression
  ☆23Updated 7 years ago
• jokamoto97 / INTACT
  Integration of TWAS and Colocalization Analysis
  ☆17Updated last year
• cnfoley / hyprcoloc
  R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data
  ☆56Updated 4 years ago
• jiazhao97 / BWMR
  BWMR (Bayesian Weighted Mendelian Randomization)
  ☆20Updated 2 years ago
• ckhunsr1 / PUMICE
  PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics
  ☆12Updated 2 years ago
• precimed / python_convert
  A collection of various utilities for GWAS summary statistics
  ☆32Updated last year
• dingruofan / xQTLbiolinks
  xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs
  ☆37Updated 9 months ago
• zhwm / SharePro_coloc
  An accurate and efficient colocalization method accounting for multiple causal signals
  ☆13Updated last year
• hailianghuang / FM-summary
  Fine-mapping method only using summary statistics
  ☆20Updated 9 years ago