Cross-population analysis using GWAS summary statistics
☆18Jun 25, 2024Updated last year
Alternatives and similar repositories for XPASS
Users that are interested in XPASS are comparing it to the libraries listed below
Sorting:
- ☆10Jul 8, 2022Updated 3 years ago
- Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)☆12Mar 24, 2023Updated 2 years ago
- R package VCM contains three approaches for solving variance components model: PX-EM algorithm, MM algorithm and Method of Moments☆16Mar 6, 2025Updated 11 months ago
- ☆19Aug 7, 2025Updated 6 months ago
- Mendelian Randomization accounting for Pleiotropy and Sample Structure using genome-wide summary statistics☆43Apr 8, 2025Updated 10 months ago
- Summary-level Unified Method for Modeling Integrated Transcriptome☆10Jun 27, 2023Updated 2 years ago
- Workflow for performing cistrome-wide associations studies☆11Jul 25, 2022Updated 3 years ago
- An R package for Mendelian Randomization in Mediation setting☆17Mar 17, 2025Updated 11 months ago
- Code to reproduce analysis and figures for 'Genetic mapping of etiologic brain cell types for obesity' (Timshel, eLife 2020)☆14May 20, 2021Updated 4 years ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆32Jul 13, 2023Updated 2 years ago
- ☆27Aug 20, 2020Updated 5 years ago
- Python script for multivariate GWAS meta-analysis☆24Dec 6, 2024Updated last year
- An R package for Mendelian Randomization☆39Mar 27, 2024Updated last year
- The gsmr R-package implements the GSMR (Generalised Summary-data-based Mendelian Randomisation) method that uses GWAS summary statistics …☆19Apr 26, 2024Updated last year
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Oct 6, 2023Updated 2 years ago
- GWAS-TWAS (Transcriptome-wide association study)-Pharmacological library integration pipeline☆19Mar 30, 2021Updated 4 years ago
- This is the code used for the paper "PMGT-VR: A decentralized proximal-gradient algorithmic framework with variance reduction", prepint.☆16Jul 2, 2022Updated 3 years ago
- Integration of TWAS and Colocalization Analysis☆17Oct 29, 2024Updated last year
- Pleiotropy-informed conditional and conjunctional false discovery rate☆37Jun 3, 2025Updated 8 months ago
- MR-link-2: pleiotropy robust cis MR☆21Aug 4, 2025Updated 6 months ago
- SCALLOP-INF analysis☆20Oct 24, 2025Updated 4 months ago
- ☆21Aug 20, 2024Updated last year
- Heritability, genetic correlation and functional enrichment estimation for case-control studies☆19Nov 26, 2023Updated 2 years ago
- Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.☆21Aug 19, 2025Updated 6 months ago
- A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics☆39Sep 18, 2025Updated 5 months ago
- R package for two-sample Mendelian randomization using the robust adjusted profile score☆40Oct 31, 2025Updated 4 months ago
- GWAS Summary Statistics for Brain Imaging Phenotypes☆20Sep 6, 2021Updated 4 years ago
- Diffusion-based Data Augmentation for Nuclei Image Segmentation☆25Dec 5, 2024Updated last year
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆42May 2, 2018Updated 7 years ago
- 🌓 Allele specific analyses across cell states and conditions☆10Nov 28, 2022Updated 3 years ago
- Simulate GWAS data from an arbitrary DAG☆11Oct 29, 2025Updated 4 months ago
- Training material for the GWAS Catalog REST API workshop☆13May 22, 2023Updated 2 years ago
- This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…☆35Sep 26, 2024Updated last year
- ☆24Jan 8, 2026Updated last month
- Leveraging functional information to improve GWAS summary statistic imputation☆19Aug 10, 2021Updated 4 years ago
- Multivariate Omnibus Statistical Test☆22Jul 2, 2024Updated last year
- LOGODetect is a powerful tool to identify small segments that harbor local genetic correlation between two traits/diseases.☆28Jul 30, 2025Updated 7 months ago
- R script to make Manhattan-style plot for TWAS☆41Aug 15, 2021Updated 4 years ago
- R package for performing Mendelian Randomization using mixture models☆25Jan 27, 2020Updated 6 years ago