Alternatives and similar repositories for XPASS:

Users that are interested in XPASS are comparing it to the libraries listed below

• cuelee / pleio
  ☆19Updated last year
• borangao / MESuSiE
  ☆17Updated 4 months ago
• StatFunGen / pecotmr
  Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆23Updated this week
• huwenboshi / hess
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆42Updated 6 years ago
• ChongWuLab / SUMMIT
  Summary-level Unified Method for Modeling Integrated Transcriptome
  ☆10Updated last year
• mancusolab / FactorGo
  Software to infer latent pleiotropic components from GWAS summary data
  ☆13Updated 2 months ago
• daiqile96 / OTTERS
  A powerful TWAS framework leveraging summary-level reference data
  ☆29Updated 2 weeks ago
• Marijn-Schipper / FLAMES
  FLAMES: Accurate gene prioritization in GWAS loci
  ☆32Updated last month
• precimed / pleiofdr
  Pleiotropy-informed conditional and conjunctional false discovery rate
  ☆28Updated last year
• jinghuazhao / EWAS-fusion
  Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)
  ☆12Updated 2 years ago
• genomicsITER / PFgenetics
  Collaborative genetic studies of idiopathic pulmonary fibrosis
  ☆16Updated 2 months ago
• yanglab-emory / TIGAR
  ☆21Updated 2 weeks ago
• YangLabHKUST / LOG-TRAM
  ☆9Updated 2 years ago
• hakyimlab / scPrediXcan
  ☆14Updated last month
• ylaboratory / seismic
  Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data
  ☆15Updated this week
• yuanzhongshang / PMR
  ☆23Updated 4 years ago
• ZikunY / CARMA
  GWAS genetics Fine-mapping method
  ☆22Updated 6 months ago
• szcf-weiya / MTWAS
  R package for "Multi-tissue Transcriptome-Wide Association Studies (MTWAS)"
  ☆15Updated 9 months ago
• RayDebashree / PLACO
  A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics
  ☆33Updated 3 years ago
• thewonlab / H-MAGMA
  ☆32Updated last year
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆31Updated 4 years ago
• mancusolab / ma-focus
  MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets
  ☆29Updated 11 months ago
• hbliu / Kidney_Epi_Pri
  Kidney Epigenome and Transcriptome-based multi-stage Prioritization
  ☆17Updated 2 years ago
• ckhunsr1 / PUMICE
  PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics
  ☆12Updated last year
• cnfoley / hyprcoloc
  R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data
  ☆48Updated 4 years ago
• BennyStrobes / TGFM
  Tissue-Gene Fine-Mapping
  ☆15Updated last month
• erwinerdem / STEAP
  Single cell Type Enrichment Analysis for Phenotypes (STEAP)
  ☆13Updated 3 years ago
• LizaDarrous / PheWAS-cluster
  ☆20Updated 8 months ago
• opain / eQTL_to_TWAS
  Methods for converting eQTL summary statistics into TWAS SNP-weights
  ☆13Updated last year
• marcoralab / MRcovid
  ☆11Updated 2 years ago