dominikkempa / faster-minuterLinks
Wavelet tree based on a fixed block boosting technique
☆16Updated 4 years ago
Alternatives and similar repositories for faster-minuter
Users that are interested in faster-minuter are comparing it to the libraries listed below
Sorting:
- Implementation of a Backpack Quotient Filter☆13Updated 3 months ago
- Online construction of run-length BWT (RLBWT) and r-index. Plus, online LZ77 parsing based on RLBWT.☆14Updated 7 years ago
- Implementation of eBWT using Prefix-free parse (PFP)☆14Updated 2 months ago
- An optimal space run-length Burrows-Wheeler transform full-text index☆65Updated 2 years ago
- A tool for merging large BWTs☆25Updated 4 years ago
- Cache-friendly, Parallel, and Samplesort-based Constructor for Suffix Arrays and LCP Arrays☆15Updated 3 months ago
- R-Index-F Library for Pattern Matching☆12Updated last year
- A cheatsheet for most common Stringology tasks☆14Updated 4 years ago
- Dynamic succinct/compressed data structures☆110Updated last year
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆83Updated last year
- BWT Text Indexing Library: a set of tools to work with BWT-based text indexes☆24Updated 3 years ago
- 📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.☆89Updated this week
- A space-efficient compressor based on the Re-Pair grammar☆10Updated 8 years ago
- Efficient construction of the BWT using string compression☆20Updated 4 months ago
- Fast and cache-efficient full-text pangenome index☆29Updated this week
- Bit packed vector of integral values☆27Updated 8 months ago
- dynamic-updateable-index☆11Updated 9 years ago
- DartMinHash: Fast Sketching for Weighted Sets☆12Updated 4 years ago
- Inducing enhanced suffix arrays for string collections [DCC'16, TCS 2017]☆26Updated last week
- FM-Index full-text index implementation using RRR Wavelet trees (libcds) and fast suffix sorting (libdivsufsort) including experimental r…☆107Updated 10 years ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆43Updated last year
- ☆20Updated 5 years ago
- Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)☆53Updated last year
- SetSketch: Filling the Gap between MinHash and HyperLogLog☆48Updated 4 years ago
- Ultra fast MSD radix sorter☆11Updated 5 years ago
- Compact Tree Representation☆16Updated 8 years ago
- Succinct Data Structure Library 3.0☆95Updated last month
- gsufsort: building suffix arrays, LCP-arrays and BWTs for string collections [AMB 2020]☆28Updated 7 months ago
- Practical Dynamic de Bruijn Graphs☆18Updated 5 years ago
- Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)☆24Updated 7 months ago