A demo implementation of Succinct de Bruijn Graphs.
☆25Jun 30, 2013Updated 13 years ago
Alternatives and similar repositories for debby
Users that are interested in debby are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- FM-index representation of a de Bruijn graph☆26Aug 7, 2017Updated 8 years ago
- Practical Dynamic de Bruijn Graphs☆18Oct 1, 2020Updated 5 years ago
- Naive de Bruijn graph implementation in python☆37Oct 2, 2017Updated 8 years ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated last year
- Build sourmash databases for genbank.☆10May 4, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- SeqOthello supports fast coverage query and containment query.☆12May 8, 2019Updated 7 years ago
- A python toolkit for building and querying multi-string BWTs☆27Mar 2, 2017Updated 9 years ago
- Minhash Index Extended to Knead Kmer Intersection☆11Mar 18, 2020Updated 6 years ago
- ☆25May 21, 2021Updated 5 years ago
- SUPBUB is a tool that, in linear time, finds out superbubbles(special graph-structures) in a directed graph.☆12Sep 19, 2019Updated 6 years ago
- vector illustrations of BWT based searching on small strings☆16Apr 29, 2019Updated 7 years ago
- A cheatsheet for most common Stringology tasks☆14Apr 14, 2021Updated 5 years ago
- MAW: a suite on the computation and application of Minimal Absent Words☆17Nov 1, 2021Updated 4 years ago
- BlastGraph is a new tool for computing intensive approximate pattern matching in a sequence graph or a de-Bruijn graph. Given an oriented…☆12May 9, 2013Updated 13 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Run-length compressed BWT with LZ77 sampled suffix array☆10Apr 25, 2022Updated 4 years ago
- Relative data structures based on the BWT☆12Apr 28, 2018Updated 8 years ago
- Go implementation of ntHash☆20Sep 16, 2021Updated 4 years ago
- collection of small scripts or how-tos that don't fall under a separate project☆21Oct 18, 2017Updated 8 years ago
- ☆18Jul 9, 2018Updated 8 years ago
- I miei appunti per il corso di Laurea in Informatica all'Università di Milano Bicocca☆23Feb 1, 2023Updated 3 years ago
- A efficient method to construct BWT index of a given DNA sequence, especially useful for gigantic and high similar genome.☆15May 4, 2016Updated 10 years ago
- Johns Hopkins University student-led genomics paper discussion group☆13Apr 19, 2020Updated 6 years ago
- MONI: A Pangenomic Index for Finding MEMs☆37Mar 25, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- Streaming sequence classification with web services ✓📌☆19Dec 8, 2022Updated 3 years ago
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆41Apr 17, 2024Updated 2 years ago
- Copy number estimation of highly duplicated sequences☆10Aug 15, 2017Updated 8 years ago
- A Bayesian method for doing transcriptome assembly from RNA-seq data☆25Feb 2, 2015Updated 11 years ago
- Lightweight resources assembly algorithm☆19May 17, 2017Updated 9 years ago
- Indel-aware consensus for aligned BAM☆21Aug 16, 2025Updated 11 months ago
- This work presents a way to write extensions in Rust and use them in Python, using sourmash as an example.☆20Oct 15, 2018Updated 7 years ago
- Fast and memory-efficient clustering + coreset construction, including fast distance kernels for Bregman and f-divergences.☆34Sep 6, 2023Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Simple and fast MinHash implementation in C with Python wrapper☆13Jul 24, 2025Updated last year
- PySeqArray: data manipulation of whole-genome sequencing variants with SeqArray files in Python (pre-release version)☆14Aug 25, 2017Updated 8 years ago
- Proteins as words, genomes as documents.☆19Nov 11, 2020Updated 5 years ago
- ☆22Jul 28, 2022Updated 3 years ago
- Using reference-free compressed data structures to analyse thousands of human genomes (1000 Genomes ReadServer)☆14Sep 23, 2017Updated 8 years ago
- Low memory multithreaded hash table☆24Mar 23, 2015Updated 11 years ago
- collection of data structures and algorithms☆19Mar 19, 2019Updated 7 years ago