Alternatives and similar repositories for bioinformatics-one-liners

Users that are interested in bioinformatics-one-liners are comparing it to the libraries listed below

• hbctraining / DGE_workshop
  ☆390Updated 3 years ago
• hbctraining / Intro-to-ChIPseq
  Intro to ChIPseq using HPC
  ☆304Updated 2 years ago
• snakemake-workflows / rna-seq-star-deseq2
  RNA-seq workflow using STAR and DESeq2
  ☆339Updated 9 months ago
• crazyhottommy / ChIP-seq-analysis
  ChIP-seq analysis notes from Ming Tang
  ☆794Updated 9 months ago
• deeptools / pyGenomeTracks
  python module to plot beautiful and highly customizable genome browser tracks
  ☆806Updated 10 months ago
• eggnogdb / eggnog-mapper
  Fast genome-wide functional annotation through orthology assignment
  ☆617Updated last year
• deeptools / deepTools
  Tools to process and analyze deep sequencing data.
  ☆720Updated 2 weeks ago
• Teichlab / scg_lib_structs
  Collections of library structure and sequence of popular single cell genomic methods
  ☆462Updated 5 months ago
• maxplanck-ie / snakepipes
  Customizable workflows based on snakemake and python for the analysis of NGS data
  ☆395Updated last week
• hbctraining / In-depth-NGS-Data-Analysis-Course
  ☆443Updated 4 years ago
• davidemms / OrthoFinder
  Phylogenetic orthology inference for comparative genomics
  ☆755Updated 6 months ago
• twbattaglia / RNAseq-workflow
  A repository for setting up a RNAseq workflow
  ☆430Updated 8 years ago
• ENCODE-DCC / atac-seq-pipeline
  ENCODE ATAC-seq pipeline
  ☆414Updated 9 months ago
• hbctraining / Intro-to-DGE
  ☆194Updated last month
• pachterlab / ffq
  A tool to find sequencing data and metadata from public databases.
  ☆574Updated 9 months ago
• pachterlab / sleuth
  Differential analysis of RNA-Seq
  ☆304Updated 10 months ago
• deweylab / RSEM
  RSEM: accurate quantification of gene and isoform expression from RNA-Seq data
  ☆440Updated last year
• jorvis / biocode
  Bioinformatics code libraries and scripts
  ☆523Updated 3 months ago
• saketkc / pysradb
  Package for fetching metadata and downloading data from SRA/ENA/GEO
  ☆326Updated 2 months ago
• ISUgenomics / bioinformatics-workbook
  Bioinformatics Workbook repository
  ☆186Updated last week
• thelovelab / DESeq2
  Differential expression of RNA-seq data using the Negative Binomial
  ☆388Updated 2 months ago
• FelixKrueger / Bismark
  A tool to map bisulfite converted sequence reads and determine cytosine methylation states
  ☆419Updated 3 weeks ago
• Boyle-Lab / Blacklist
  Application for making ENCODE Blacklists
  ☆304Updated 4 years ago
• mmatschiner / tutorials
  Tutorials on phylogenetic and phylogenomic inference
  ☆381Updated last year
• gpertea / gffread
  GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more
  ☆411Updated 4 months ago
• macs3-project / MACS
  MACS -- Model-based Analysis of ChIP-Seq
  ☆735Updated last month
• pachterlab / kallisto
  Near-optimal RNA-Seq quantification
  ☆678Updated last month
• tanghaibao / jcvi
  Python library to facilitate genome assembly, annotation, and comparative genomics
  ☆818Updated this week
• shenlab-sinai / ngsplot
  Quick mining and visualization of NGS data by integrating genomic databases
  ☆264Updated 2 years ago
• FelixKrueger / TrimGalore
  A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…
  ☆501Updated 2 months ago