Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap
☆26Sep 23, 2020Updated 5 years ago
Alternatives and similar repositories for bioc_2020_tidytranscriptomics
Users that are interested in bioc_2020_tidytranscriptomics are comparing it to the libraries listed below
Sorting:
- ☆11Jun 26, 2020Updated 5 years ago
- BioC2020: Where Software and Biology Connect☆12Mar 15, 2023Updated 3 years ago
- ☆10Oct 6, 2020Updated 5 years ago
- The blog of tidyomics☆14Jul 12, 2025Updated 8 months ago
- Brings bulk and pseudobulk transcriptomics to the tidyverse☆177Updated this week
- Functional enrichment analysis of high-throughput omics data☆20Jan 6, 2025Updated last year
- Slides for my RLadies NYC Presentation☆11Feb 27, 2020Updated 6 years ago
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆24Jul 2, 2025Updated 8 months ago
- The vignette provided has a basic sketch of the steps we interactively will go through to build a package with devtools, explains version…☆11Jul 29, 2020Updated 5 years ago
- Public data resources and Bioconductor: The goal of this workshop is to introduce Bioconductor packages for finding, accessing, and using…☆15May 12, 2025Updated 10 months ago
- Comparison of single cell normalization strategies☆10Aug 13, 2021Updated 4 years ago
- Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor☆27Updated this week
- Introduction to the Bioconductor project☆19Oct 17, 2025Updated 5 months ago
- ☆32Jan 7, 2026Updated 2 months ago
- Supplementary files for paper "Detection and removal of barcode swapping in single-cell RNAseq".☆11Jul 5, 2018Updated 7 years ago
- ATACseqQC tutorials for BioC 2019 workshop☆19Jul 28, 2020Updated 5 years ago
- ☆17May 15, 2024Updated last year
- Brings SummarizedExperiment to the tidyverse☆30Updated this week
- An introduction to matrix factorization and PCA and SVD.☆41Sep 28, 2023Updated 2 years ago
- UNCURL is a tool for single cell RNA-seq data analysis.☆15Jun 27, 2022Updated 3 years ago
- Analysis of transposable elements☆13Dec 4, 2025Updated 3 months ago
- Compilation of R heatmap functions.☆14Oct 12, 2021Updated 4 years ago
- R/Bioconductor package for working with 10x scATACseq data☆42Nov 13, 2023Updated 2 years ago
- Code for producing the analysis in the "Quantifying the tradeoff between sequencing depth and cell number in single-cell RNA-seq" manuscr…☆16Feb 5, 2020Updated 6 years ago
- ☆16Jul 9, 2024Updated last year
- Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…☆22Jun 6, 2025Updated 9 months ago
- Brings SingleCellExperiment objects to the tidyverse☆37Nov 10, 2025Updated 4 months ago
- Marker gene selection from scRNA-seq data☆16Sep 15, 2020Updated 5 years ago
- Differential Hi-C Data Analysis Workshop https://currentprotocols.onlinelibrary.wiley.com/doi/abs/10.1002/cpbi.76☆15Apr 10, 2021Updated 4 years ago
- iS-CellR: interactive graphical tool for analysis of single-cell RNAseq data☆24Oct 9, 2019Updated 6 years ago
- Template for building a bioconductor workshop package using github actions☆23Jun 26, 2025Updated 8 months ago
- SummarizedBenchmark defines a flexible framework for benchmarking computational methods in R.☆15Aug 24, 2021Updated 4 years ago
- Draw heatmap simply using a tidy data frame☆358Feb 7, 2026Updated last month
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Aug 11, 2020Updated 5 years ago
- Rmarkdown / compiled html files for human reprogramming dataset analysis☆18Jun 11, 2020Updated 5 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48May 23, 2020Updated 5 years ago
- A proof of concept RNA-Seq pipeline with Nextflow☆33Jan 13, 2021Updated 5 years ago
- S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects☆12Oct 30, 2025Updated 4 months ago
- A differential and enrichment analyses pipeline for bulk ATAC-seq (and RNA-seq)☆16Feb 9, 2026Updated last month