aedin / PCAworkshopLinks
An introduction to matrix factorization and PCA and SVD.
☆41Updated last year
Alternatives and similar repositories for PCAworkshop
Users that are interested in PCAworkshop are comparing it to the libraries listed below
Sorting:
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated 2 months ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated 2 years ago
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆29Updated 2 months ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package☆17Updated 5 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆30Updated 9 months ago
- Bioconductor package for management of multi-assay data☆72Updated 2 months ago
- Template for building a bioconductor workshop package using github actions☆20Updated 3 weeks ago
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated 7 months ago
- Glimma R package☆50Updated 10 months ago
- Explore design matrices interactively with R/Shiny☆37Updated 3 months ago
- Functional enrichment analysis of high-throughput omics data☆20Updated 6 months ago
- Demonstration of the use of an R package to organize a data analysis project☆21Updated 5 years ago
- countsimQC - Compare characteristic features of count data sets☆27Updated 2 weeks ago
- The blog of tidyomics☆14Updated this week
- Clone of the Bioconductor repository for the basilisk package.☆28Updated last month
- Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap☆26Updated 4 years ago
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆27Updated 3 months ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 10 years ago
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆46Updated 8 months ago
- Bioconductor package that makes BIG data pint-sized.☆21Updated last year
- Transcript quantification import with automatic metadata detection☆68Updated 3 weeks ago
- A Grammar of Data Manipulation for Omics Data☆21Updated 4 years ago
- Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor☆23Updated last week
- pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data☆56Updated 2 months ago
- R package providing Variance Stabilizing Transformations appropriate for RNA-Seq data☆21Updated last month
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- This is the ensembldb development repository.☆35Updated 10 months ago
- Representation and manipulation of genomic intervals☆46Updated 3 weeks ago
- Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment☆33Updated 2 weeks ago