A shiny-based web tool for interactive analysis of DepMap data
☆25Feb 13, 2021Updated 5 years ago
Alternatives and similar repositories for shinyDepMap
Users that are interested in shinyDepMap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This repostory contains codes for Shimada et al., "A tool for browsing the Cancer Dependency Map reveals functional connections between g…☆13Sep 3, 2021Updated 4 years ago
- Cancer Dependency Map package☆33Aug 16, 2024Updated last year
- ☆18Aug 5, 2023Updated 2 years ago
- A unified downloader+preprocessor for cancer genomics datasets☆16Apr 7, 2024Updated 2 years ago
- What you need to process the Quarterly DepMap-Omics releases from Terra☆125Jul 17, 2026Updated last week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Inference of gene dependency from RNAi screening datasets.☆19Apr 9, 2020Updated 6 years ago
- ☆17Apr 27, 2023Updated 3 years ago
- Shiny UI for the NGLVieweR package☆11Nov 19, 2024Updated last year
- KDS software for Kinase Drug Selectivity☆10Jun 22, 2026Updated last month
- A collection of perl scripts for NGS analysis☆17Oct 2, 2024Updated last year
- ☆13Jul 5, 2024Updated 2 years ago
- CellNet, for cancer☆11Jul 14, 2022Updated 4 years ago
- DEAPP shiny App☆30Jun 8, 2022Updated 4 years ago
- Human and mouse genome assemblies customized for rDNA mapping☆13Mar 7, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆14May 15, 2024Updated 2 years ago
- Visual test system for R packages☆14Sep 24, 2015Updated 10 years ago
- ☆15Sep 27, 2024Updated last year
- Modeling of time series data for CRISPR KO experiments☆39Updated this week
- ☆34Jul 20, 2018Updated 8 years ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Jul 19, 2022Updated 4 years ago
- BAGEL software☆28Jan 30, 2024Updated 2 years ago
- ☆15Dec 4, 2023Updated 2 years ago
- CReM-dock: generation of chemically reasonable molecules guided by molecular docking☆34Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Oct 26, 2018Updated 7 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆37Jan 6, 2022Updated 4 years ago
- Small R package with some functions to visualize DGE results downstream of DESeq2☆12Jul 6, 2023Updated 3 years ago
- Manage Files Across Sessions☆14Apr 29, 2026Updated 2 months ago
- Scripts and Data associated with our publication on genomic signatures to discriminate LUAD and LUSC lung cancer types using TCGA data☆11Mar 2, 2022Updated 4 years ago
- A toolkit for working with ATAC-seq data.☆24Jan 22, 2026Updated 6 months ago
- ☆12Dec 8, 2021Updated 4 years ago
- Virtual Select widget for shiny apps☆16May 11, 2022Updated 4 years ago
- Mapping of GENCODE gene annotation set files to older assembies☆14Apr 16, 2026Updated 3 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- R语言爬虫；Python爬虫；rvest；Rcurl☆15Jan 24, 2018Updated 8 years ago
- ChromBERT: Uncovering Chromatin State Motifs in the Human Genome using a BERT-based Approach☆12Mar 17, 2026Updated 4 months ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆122Jan 15, 2023Updated 3 years ago
- Molecular Data Provider☆10Dec 17, 2025Updated 7 months ago
- Visualize and interact with Protein Data Bank (pdb) and structural files in R and Shiny☆54May 2, 2026Updated 2 months ago
- Cytoscape interface to STRING and STITCH☆11May 9, 2025Updated last year
- Classifying tumor types based on Whole Genome Sequencing (WGS) data☆50Nov 20, 2023Updated 2 years ago