alpha-unito / jupyter-workflow
Distributed workflows design and execution with Jupyter Notebooks.
☆11Updated last week
Related projects ⓘ
Alternatives and complementary repositories for jupyter-workflow
- StreamFlow Workflow Manager☆52Updated this week
- a python library for working with flow cytometry data.☆14Updated 9 years ago
- Images for Saturn Cloud☆12Updated 3 weeks ago
- The uncompromising Jupyter notebook formatter.☆14Updated 9 months ago
- PyIOmica (pyiomica) is a Python package for omics analyses.☆15Updated 2 years ago
- Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data☆16Updated last year
- Ansible Playbook for usegalaxy.org☆30Updated this week
- An opinionated open source deployment of jupyterhub based on an Slurm job scheduler.☆28Updated last month
- The R package manager that is blazingly fast ⚡. Powered by mamba.☆72Updated 2 years ago
- dead Simple Queue - Slurm arrays for files with jobs in them.☆23Updated 2 years ago
- provides common tools and lookup tables used primarily by the hgvs and uta packages☆21Updated last week
- jinja2-enabled jupyter notebooks☆35Updated 3 months ago
- Provides syntax highlighting for Apptainer/Singularity definition files.☆8Updated last year
- CPU and GPU deterministic and therefore fully reproducible machine learning pipelines using MLflow.☆46Updated last year
- Course on good principles & practices in Data Management (https://tinyurl.com/cruk-myrd)☆16Updated last year
- A statically generated catalog of available Snakemake workflows☆32Updated last month
- Build and maintain multiple custom conda environments all in one place.☆37Updated last year
- Build and test new apps for the KBase platform☆27Updated 6 months ago
- A Python library for reading and manipulating genetic data.☆22Updated last week
- Repository for Discussions and Materials about The Carpentries Workbench☆17Updated last week
- The CWL v1.0 - v1.2 user guide☆42Updated 3 weeks ago
- The WES API is a standard way to run and manage portable workflows.☆82Updated last month
- example singularity definition files and demos☆27Updated 6 years ago
- The Nextstrain command-line interface (CLI)—a program called nextstrain—which aims to provide a consistent way to run and visualize patho…☆27Updated last week
- DuckDB Extension for reading and writing FASTA and FASTQ Files☆20Updated last year
- deploy a snakemake pipeline directly from version control (under development)☆21Updated last week
- Exercises for training scientists to perform some RNA-seq analyses.☆11Updated 5 years ago
- Ansible roles to configure assorted compontents for an Ubuntu VM or container configured with https://github.com/galaxyproject/ansible-ga…☆11Updated this week
- streamlined singularity python client (spython) for singularity☆57Updated last month
- Implementation of gene-level rare coding variant association tests targeting allelic series: cases where increasingly deleterious mutatio…☆12Updated last week